Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2562 ATGAAGTATTTTCTGAAGGGCTGTAAATGTGAACTTGTTCTATGCTTTCTGTTCTGCTGCTGTTTTCTATTGTCTGCAAGTCAGAGAACTGACCCTACTGAAGTTGACACATTGAGAACCATAAGGGACAATTTGATTGATATTAATGGAAATTTGAGCAGCTGGAGTCGCGGAGACCCATGTAATTCCAAGTGGACGGGAGTTCTGTGCTTGAATACAACATTAGAAGATGGCTTTCTACATGTTCAACGATTGCATCTAATGAATATGAGCTTGGCTGGAACTTTGGTACCTGAGATTGGAAACTTATCTCATCTGGAAATATTGGACTTTATGTGGAACAACATAACTGGGAATATTCCAAAGGAAATCGGCAAGATCAAAACTTTAAAACTCTTGCTCTTGAATGGAAATCAATTAATAGGTCATTTGCCAGAAGAGCTTGGCTATCTTCCAGTCTTGAACAGAATGCAAATTGATCAGAACAATATTACAGGACCAATACCTTTATCATTTGCAAACCTGACAAATGCACAACACTTTCACATGAACAACAATTCACTTAGTGGACAAATTCCATCGCAGCTTTCTGGCTTACGAAATCTTCTTCACCTTCTTCTTGACAACAACAATTTATCAGGAAAGCTCCCAGATGAGCTTGCTGAGATGCCAAGCCTAAAGATACTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCAGATTCTTATGGCAACATGTCAAAATTATTGAAATTGAGCCTTAGGAACTGCAATTTGACAGGACCAATTCCTGATTTCAGCAGGATACCACACCTTGGTTATCTTGACCTCAGTCTCAATCAATTCAATGAACCTATTCCTACTAATAAGCTATCTGAAAATATCACAACTATTGATTTATCAAATAATAAGCTTAATGGAACTATTCCATCTTACTTTTCTGATCTTCCACATCTTCAGAAATTGTCAATTGCAAACAACGCACTGAGTGGCAATGTTCCCTCTTCCATTTGGCAGAACAAAACTTTAAATGGAACAGAAAGACTTCTTTTGGACATGCAAAATAATCAGCTTACAAGCATATCAGGCAGTATATCAAATCTTCCATCAAATGTCACACTCCTGCTTCAGGGGAATCCTATATGCTCAAATAACAACTCCTTAGTTCAATTTTGTGGATCTAAAAGTGAAAACGATATGAATGGTAACTCCATTGTAAGCTGTCCAAGTCAACCATGCCCTCCTCCTTATGAATATTCTGCGCAGTGTGTCTGTGCCGTGCCATTGCTTATTCATTATCGGTTGAAGAGTCCAGGATTTTCAGATTTCCTTACATATGTGGAGGCATTTGTAAGCTTCTTAGCAAGTGGACTTAACATACATAGTAATCAGCTATTCATTAATAATTTCATGTGGGAAGAAGGTCGATTGAGAATGTACTTGAAGCTTTTTCCTGAATATGTTGATAATACAAGCTCTCATACTTTCAATGAAAGCGAGGTTATTCGGCTAAGAGACTTGTTCAGAGAATGGGATATCCATGAGAGTGACTTGTTTGGACCTTATGAACTTCTAGACTTCGTTCTCCTCGATCCTTACGAAGATGCGACTTCCTCCTCTTCAAGTTCAGGAATAAGCAAAGGTGCATTGGCTGGAATTGTCTTAGGTGCAATTGCCGGTTCAGTTACATTATCTGCAATTGTTGCCATTCTTATATTGAAAATACGCTTGAAAGATTACCGTACAATTTCCAGACGACGTAAATCTTCTAAGGTCTCGATAAAAATTGATGGTGTAAGGTCATTCAATTATGAAGAAATGGTGTTGGCTACAAACGATTTTAGTCAATCTGCTGAAATTGGACAAGGAGGGTATGGGAAGGTTTATAAAGGTAATCTTCATGATGGAACTGTCGTTGCCATAAAACGTGCACAAGAAGGTTCACTGCAAGGTGAGAGGGAGTTTCTTACAGAAATTCAACTGCTATCAAGGTTACATCATCGCAATCTTGTCTCTTTGATTGGTTACTGTGATGAAGATGGTGAACAGATGCTGGTTTATGAATACATGCCAAATGGAACACTAAGGGATCACATTTCTGCTAAATCTAAAGAACCGCTTAGTTTTGCCATGAGATTGAAGATTGCTCTAGGGTCAGCTAAAGGTCTTGTCTATCTACACACAGAAGCTGATCCTCCAATATTCCACAGAGATGTCAAAGCTAGCAACATATTATTAGACTCAAAATTCATAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTAGCTCCAGTTCCAGATATTGAAGGCAACTTGCCTGGCCATGTATCTACAGTTGTAAAAGGGACCCCGGGTTACCTTGATCCAGAGTATTTCTTAACTCACAAGTTAACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTTGAGCTTGTGACCGGAAAGCCACCAATCTTCCATGGTGAAAATATTATTAGACAGGTTAAACTGGCATTCGAATCGGGTGGAGTATTTTCGATTGTTGATAACCGAATGGGATTTTACACTTCTGAGTGTGTGGAAAAGCTTTTGAAATTGGGTTTAAAGTGCTGCAAAGATTCACCAGATGAAAGGCCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAAATCATATTGACTATGATGCCTGAGTACCATGCCAAAAAGGGAGCTGATTATGACTTAAGTGATTCTGGAACCACATTTAGTTCACAACCCTCATCATCTAATATAAAGACTCCTTTTATAGTTTCAGGAGATATTTTGGGTAGTGACCTTGTTAGTGGTGACATACCTACCATTAGACCAAGATAG 2844 0.385 MKYFLKGCKCELVLCFLFCCCFLLSASQRTDPTEVDTLRTIRDNLIDINGNLSSWSRGDPCNSKWTGVLCLNTTLEDGFLHVQRLHLMNMSLAGTLVPEIGNLSHLEILDFMWNNITGNIPKEIGKIKTLKLLLLNGNQLIGHLPEELGYLPVLNRMQIDQNNITGPIPLSFANLTNAQHFHMNNNSLSGQIPSQLSGLRNLLHLLLDNNNLSGKLPDELAEMPSLKILQLDNNNFGGNSIPDSYGNMSKLLKLSLRNCNLTGPIPDFSRIPHLGYLDLSLNQFNEPIPTNKLSENITTIDLSNNKLNGTIPSYFSDLPHLQKLSIANNALSGNVPSSIWQNKTLNGTERLLLDMQNNQLTSISGSISNLPSNVTLLLQGNPICSNNNSLVQFCGSKSENDMNGNSIVSCPSQPCPPPYEYSAQCVCAVPLLIHYRLKSPGFSDFLTYVEAFVSFLASGLNIHSNQLFINNFMWEEGRLRMYLKLFPEYVDNTSSHTFNESEVIRLRDLFREWDIHESDLFGPYELLDFVLLDPYEDATSSSSSSGISKGALAGIVLGAIAGSVTLSAIVAILILKIRLKDYRTISRRRKSSKVSIKIDGVRSFNYEEMVLATNDFSQSAEIGQGGYGKVYKGNLHDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEDGEQMLVYEYMPNGTLRDHISAKSKEPLSFAMRLKIALGSAKGLVYLHTEADPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGNLPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELVTGKPPIFHGENIIRQVKLAFESGGVFSIVDNRMGFYTSECVEKLLKLGLKCCKDSPDERPKMAEVARELEIILTMMPEYHAKKGADYDLSDSGTTFSSQPSSSNIKTPFIVSGDILGSDLVSGDIPTIRPR* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2562 947 Pfam Protein kinase domain 617 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2562 947 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 14 918 - -
Mtr5g2562 947 SUPERFAMILY L domain-like 45 411 - -
Mtr5g2562 947 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Mtr5g2562 947 SMART serkin_6 616 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2562 947 Gene3D Transferase(Phosphotransferase) domain 1 692 906 - -
Mtr5g2562 947 Gene3D Phosphorylase Kinase; domain 1 586 691 - -
Mtr5g2562 947 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Mtr5g2562 947 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Mtr5g2562 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Mtr5g2562 947 Pfam Leucine rich repeat 296 342 IPR001611 GO:0005515
Mtr5g2562 947 Gene3D Ribonuclease Inhibitor 295 414 IPR032675 -
Mtr5g2562 947 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 918 - -
Mtr5g2562 947 ProSiteProfiles Protein kinase domain profile. 616 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2562 947 Gene3D Ribonuclease Inhibitor 187 294 IPR032675 -
Mtr5g2562 947 CDD STKc_IRAK 622 888 - -
Mtr5g2562 947 SUPERFAMILY Protein kinase-like (PK-like) 601 903 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2562 Mtr-Chr5 33482833 33491744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2562 12 898 Receptor kinase-like Gene Family AT5G01950 58.269 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Mtr5g2562 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2562 - - gmx:100801035 1348.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2562 5 33482833 33491744 Mtr5g2562 5 33482833 33491744 ECH
Mtr3g1880 3 31730867 31738770 Mtr5g2562 5 33482833 33491744 PCT