Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2560 ATGACAGAGATTACATTGAATTCAATTGTCAATATCTTATACCATACACTAAAAAAACTCTCCATGAAATTCTTCTCACCATTGCAAGCTTTTCTTTTTATCATTGTTATTCTTTCTCCTCTTGCTATTGCTGACCTGAATTCCGATAAGCAAGCCCTTCTTGATTTTGCTTCTGCCATCCCTCATCGTCGCAACCTTAAGTGGGACCCTGCTACCTCAATATGTACATCTTGGATAGGCATCACTTGCAATCCAAACAGTACTCGTGTAGTTTCTGTCCGGCTCCCCGGAGTCGGACTAGTAGGCACCATTCCATCCAATACACTCGGCAAACTTGACTCACTTAAAACTATTAGCCTTCGCTCAAACCTACTAAGTGGAAGTATACCTCATGATATTACTTCTCTTCCGTCTCTACAATATCTCTACCTTCAACATAATAACCTTTCTGGTGAATTACCAACATCATTGCCGTCGCAACTCAATGCACTTATTTTGTCATACAATTCTTTCACAGGTAGCATTCCGAAGACATTGCAAAACTTAACGCAACTAACTCGATTGAGCCTCGAGAACAACTCCTTATCTGGACCGATACCTGATCTCCATGTAAACCTCAAACAATTGAATTTGAGCTACAACCATTTGAATGGATCTATCCCTTCATCTCTTCATAGTTTCTCAAGTTCTTCCTTTGAAGGGAACTCTCTCTTATGTGGATTGCCTCTAAAGCCGTGCTCCGTAGTCCCTCCTCCATCGCCTCCTCCTGCATTGGCTCCTATAAGACACGACTCGAAAAATAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGTGGAGCTGTTCTGTTGTTTTTCGTAGCTCTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAACGGAACCTCAAGAGTAGTTAAAGCCAAAGGTCCTAGTGGTGGTGGTGGAAGGACTGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTGCAAGAATCTGAGAGAAATAAATTGGCTTTCTTTGAGGGATGCTCTTACAATTTCGATCTCGAGGATTTGTTGAGAGCTTCGGCTGAGGTCCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAGGAGCAAACGACGGTTGTAGTCAAAAGGTTGAAAGAAGTTGTGGTTGGCAAGAGGGAATTCGAACAGCAGATGGAGATTGTTGGAAGCATTGGAAATCACCCGAATGTCGTTCCGCTTCGCGCTTATTATTATTCAAAGGATGAGAAGCTTTTAGTTTGTGACTATTTCCCGAATGGCAATCTATCTATACTCTTGCATGGTACTAGGACAGGCGGAAGAACTACTTTAGATTGGAACACGCGAGTGAAAATCTCTCTTGGAATTGCCAGAGGAATTGCTCATTTACATTTAGTTGGTGGTCCAAGATTCACACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAACCAAGATAACGATGGCTGCATTTCCGATTTCGGCCTGACACCACTCATGAACATTCCTGCAACCCCTTCTAGAACCATGGGCTACCGTGCTCCTGAGGTAATTGAGACTCGGAAGCACACTCATAAATCAGATGTTTACAGTTTTGGTGTCCTTCTTTTAGAAATGCTTACAGGTAAAGCGCCACAACAGTCTCCAGTACGCGATGACATGGTCGATCTCCCTAGATGGGTTCGGTCCGTTGTTAGGGAGGAGTGGACCGCCGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGTATGACTTGTGTCGCGAAGGTTCCAGATATGAGGCCTAACATGGAGGAAGTAGTGAGAATGATTGAAGAAATTCGGCAATCTGACTCAGATAACCGGCCGTCTTCTGATGATAATAAATCGAAGGATTTAAATGTCCAAACTCCATGA 1956 0.4248 MTEITLNSIVNILYHTLKKLSMKFFSPLQAFLFIIVILSPLAIADLNSDKQALLDFASAIPHRRNLKWDPATSICTSWIGITCNPNSTRVVSVRLPGVGLVGTIPSNTLGKLDSLKTISLRSNLLSGSIPHDITSLPSLQYLYLQHNNLSGELPTSLPSQLNALILSYNSFTGSIPKTLQNLTQLTRLSLENNSLSGPIPDLHVNLKQLNLSYNHLNGSIPSSLHSFSSSSFEGNSLLCGLPLKPCSVVPPPSPPPALAPIRHDSKNKLSKGAIIAIAVGGAVLLFFVALVIVLCCLKKKDNGTSRVVKAKGPSGGGGRTEKPKEEFGSGVQESERNKLAFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEQTTVVVKRLKEVVVGKREFEQQMEIVGSIGNHPNVVPLRAYYYSKDEKLLVCDYFPNGNLSILLHGTRTGGRTTLDWNTRVKISLGIARGIAHLHLVGGPRFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNIPATPSRTMGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVRSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMTCVAKVPDMRPNMEEVVRMIEEIRQSDSDNRPSSDDNKSKDLNVQTP* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2560 651 ProSitePatterns Protein kinases ATP-binding region signature. 362 393 IPR017441 GO:0005524
Mtr5g2560 651 Pfam Protein kinase domain 359 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2560 651 Gene3D Ribonuclease Inhibitor 206 247 IPR032675 -
Mtr5g2560 651 Pfam Leucine rich repeat 103 149 IPR001611 GO:0005515
Mtr5g2560 651 ProSiteProfiles Protein kinase domain profile. 356 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2560 651 MobiDBLite consensus disorder prediction 627 642 - -
Mtr5g2560 651 MobiDBLite consensus disorder prediction 627 651 - -
Mtr5g2560 651 Gene3D Transferase(Phosphotransferase) domain 1 432 650 - -
Mtr5g2560 651 Gene3D Phosphorylase Kinase; domain 1 324 431 - -
Mtr5g2560 651 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Mtr5g2560 651 MobiDBLite consensus disorder prediction 307 331 - -
Mtr5g2560 651 CDD STKc_IRAK 362 627 - -
Mtr5g2560 651 PANTHER OS05G0588300 PROTEIN 22 651 - -
Mtr5g2560 651 Gene3D Ribonuclease Inhibitor 47 158 IPR032675 -
Mtr5g2560 651 Gene3D Ribonuclease Inhibitor 159 202 IPR032675 -
Mtr5g2560 651 Pfam Leucine rich repeat N-terminal domain 47 84 IPR013210 -
Mtr5g2560 651 SUPERFAMILY Protein kinase-like (PK-like) 360 625 IPR011009 -
Mtr5g2560 651 SUPERFAMILY L domain-like 60 246 - -
Mtr5g2560 651 Pfam Leucine Rich Repeat 205 227 IPR001611 GO:0005515
Mtr5g2560 651 PANTHER LRR RECEPTOR-LIKE KINASE 22 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2560 Mtr-Chr5 33463565 33467602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2560 28 649 Receptor kinase-like Gene Family AT5G58300 67.773 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Mtr5g2560 Pkinase 2.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2560 - - gmx:100818344 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2560 5 33463565 33467602 Mtr5g2560 5 33463565 33467602 ECH
Mtr3g1876 3 31669925 31674437 Mtr5g2560 5 33463565 33467602 PCT