Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2556 ATGGCAGATGAAACACCAAGTGGTTTGAAGGAGGAGGTTCCAGACATTGCACCATTTGATCCTACTAAGAAAAAGAAGAAGAAGAAAGTTACAGTTATAGATCCTGCAGATGATGAATCAGCGGATAAATTGGCCGAGAAGATAGAAAATCTGTCAGTTTCTGATGGGACTGACAGTGCATTTTCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATTAGTAACTTAAATGATATTGATGAGAGTGGCCCTAGTGCAGAGGCAGTTGAAGATTTAGATGATCATGCTGAAGATGATGAAGAAGAAGCAGTTGCTTTGCAGCCTCGTTATCCTTGGGAAGGGAGTGATCGTGATTATACATATGAGGAGCTTCTTGGCAGGGTGTTCAACATTCTTCGTGAACATAATCCAGATCTCGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTCCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTTATGGACCTGTGCAAATCGATGCATCGACCGCCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTGGGTACTAGTGGTTCTCTAGATGGACAGCAAAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAATTTTGAAGGAATTCTCCGACGATATATCAATGAATATGTCATTTGTATTGGATGCAAGAGTCCAGACACATTACTTTCAAAGGAGAACCGTCTCTTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCGGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCAGAAGGAATGCTGGGGCATGA 825 0.4291 MADETPSGLKEEVPDIAPFDPTKKKKKKKVTVIDPADDESADKLAEKIENLSVSDGTDSAFSGLKKKKKKPVEISNLNDIDESGPSAEAVEDLDDHAEDDEEEAVALQPRYPWEGSDRDYTYEELLGRVFNILREHNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKSMHRPPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICIGCKSPDTLLSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2556 274 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 223 258 IPR016190 GO:0003743|GO:0006413
Mtr5g2556 274 Pfam Domain found in IF2B/IF5 144 252 IPR002735 GO:0003743|GO:0006413
Mtr5g2556 274 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 1 273 - -
Mtr5g2556 274 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 273 IPR045196 GO:0003743|GO:0006413
Mtr5g2556 274 MobiDBLite consensus disorder prediction 75 105 - -
Mtr5g2556 274 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 119 226 IPR016189 GO:0003743|GO:0006413
Mtr5g2556 274 MobiDBLite consensus disorder prediction 1 32 - -
Mtr5g2556 274 SMART eIF2Bneu4 144 253 IPR002735 GO:0003743|GO:0006413
Mtr5g2556 274 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g2556 274 MobiDBLite consensus disorder prediction 85 102 - -
Mtr5g2556 274 Gene3D - 117 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2556 Mtr-Chr5 33408530 33412921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2556 1 270 Eukaryotic Initiation Factors Gene Family AT5G20920 72.794 2.32e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2556 K03238 - gmx:100783618 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2556 5 33408530 33412921 Mtr5g2556 5 33408530 33412921 ECH