Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2552 ATGGGGGTTGAAGTGTGTATGAATAATTATTGTAAGGAAGGTTCAACTGGTGAATGGAAGAAAGGGTGGTCTTTGATCTCTGGTGGGTTTGCCAAACTCTGCAACAAATGCGGGCTTGCCTATGAGAATTCACTTTTCTGTGATAAATTCCACCGTCATGAAACTGGATGGAGGAAATGCAGCAATTGCAGCAAGCCTATCCACAGTGGATGTATAGTATCAAAGTCTTCGTTCGAGTACCTTGATTTCGGTGGTATAACTTGTGTTACCTGTGTTAAGCCCTCCCAGCTTTGTCTGAATACTGAAAATCATAATAGGTTCTCTCAAACGACCAAAAACAATGCAAGTGATCAATATGGTGAACATATTGATGGTAGACTACTGGTGGAACAAGCTGGCAAAGGAAACCTTATGCAGTTGTGTAGAATTGGTGAAGTCGGTGAATCAAGCCGTTGGCCACAAGCTCAAAGAGATGCCATGGTTTCATGTATTGGTCCAAAAACTGAAGAAGTTAAGTGTCAATTCAACAAAGAGGATACAAGATTTTTGAATGTGATGAAACATTCTAGTCATTTAACCGCATTTACTACATTGGAAAATAATAGACCATCATGGGAGACTAAAAGTATAGACGAAACGCTTTCACTAAAGATGGCTCTAGGAACTTCATCAAGAAATTCTGTTCTGCCGTTGGCCACAGAGATTGGAGAAGGTAAACTTGAGGGTAAAGCATCTTCTCATTTTCAACAAGGGCAAACATCTCAGTCTATATTGGCTCAACTATCAAAGACTGGGATTGCCATGAATCTTGAAACAAATAAAGGCATGATCTCTCATCCACCACGCCGGCCACCTGCTGATGTGAAGGGTAAAAATCAGTTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCGGGGGATTTGAAGTCTACTGTAGTGCCCTTATTTGAGAAGGTCTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTGCTCCCAAAAGCGTGTGCTGAGGCTTTTCTTCCTCGTATTTTGCAATCAGAAGGTGTTCCTTTACAGTTCCAAGATATAATGGGGAATGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCTTGCAATTAAATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGGGAAAAATTTCTATTTGGTTTTAGAAGGTCATTGACTTCTATTGTTACACAGGATGCCTCTACATCTTCTCATTCTAACGGCATTTTGATAAAGGATACAAACTTTTCTGGTGCACCTCAGAATTTGAACTCCTTAAGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGGGAACCTTACTTAAATGGACATTCAGAACATCTGCGTTTGGGTAATGGAACTGCTGATTGGCTTAAAACTGCAAATAGTGAGGAGGAAATGAACAATGGTCCATTGCAGCGACTGGTTTCAGTTTCAGAGAAGAAGAGGTCTCGCAATATTGGGACGAAAACTAAGAGGTTGCACATTCATAGTGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGAATTTCTTTGTCCGCCGCCTAGTGTCGAGCCAAATTTTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTCGGAAAGATTAAAACCAATGCCTCTCCATCAGGGTCTTCAGGTTCTGCATCAGAGCAGCTCGGTCCAAAGGAACAAGAAAGTCTTCAAAGAACCAAAAAAGATTCTAAAAAGAAGCGAAAAATTGCAGAAAAGAGCAAGTCAATTCAAGAACACAAGCTTTCAGGCCTAGATGCTCTTGCCAATGCAGCAGTTTTAGGCAATAATCTTGCTGACCCTGACGAGTCGTCGTCAGCTGGAGTCACCACAAGACATCCGAGGCATCGTCCTGGATGCACTTGTATCGTGTGCATTCAACCACCAAGTGGACAGGGAAAACATGACCCGACATGCACTTGCCTTGCCTGTGAGACTCTTAAGCGCCGGTTCAAGAGCCTTACGATGCGTAAGAAGAAAAACCAATTAGAATCTGAAGCAGTTGCTGACCAAAACAATCAAGTGAATCATAGAGATGAAGCAGGTACTAGTGTTGGTGCATCGAGACAAGATACAAGTCACTCAACGGATGAGGGAAGCCTAAATGGAGGTCAGCTTGAGGTTGTTGAGCCTAGTGCCGCGGGACAATTGGATTTGAATTGTCATCCCAGTCATGAAGAAATGGAAACTGATACATATAACAGGCCAAAGCATGACTAG 2361 0.4214 MGVEVCMNNYCKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGCIVSKSSFEYLDFGGITCVTCVKPSQLCLNTENHNRFSQTTKNNASDQYGEHIDGRLLVEQAGKGNLMQLCRIGEVGESSRWPQAQRDAMVSCIGPKTEEVKCQFNKEDTRFLNVMKHSSHLTAFTTLENNRPSWETKSIDETLSLKMALGTSSRNSVLPLATEIGEGKLEGKASSHFQQGQTSQSILAQLSKTGIAMNLETNKGMISHPPRRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRSLTSIVTQDASTSSHSNGILIKDTNFSGAPQNLNSLSSFSNLLQSMKGNGEPYLNGHSEHLRLGNGTADWLKTANSEEEMNNGPLQRLVSVSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVEPNFVTIEDQVFEEYDEPPVFGKIKTNASPSGSSGSASEQLGPKEQESLQRTKKDSKKKRKIAEKSKSIQEHKLSGLDALANAAVLGNNLADPDESSSAGVTTRHPRHRPGCTCIVCIQPPSGQGKHDPTCTCLACETLKRRFKSLTMRKKKNQLESEAVADQNNQVNHRDEAGTSVGASRQDTSHSTDEGSLNGGQLEVVEPSAAGQLDLNCHPSHEEMETDTYNRPKHD* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2552 786 MobiDBLite consensus disorder prediction 705 786 - -
Mtr5g2552 786 MobiDBLite consensus disorder prediction 713 749 - -
Mtr5g2552 786 MobiDBLite consensus disorder prediction 576 624 - -
Mtr5g2552 786 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 587 779 - -
Mtr5g2552 786 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 581 - -
Mtr5g2552 786 MobiDBLite consensus disorder prediction 581 600 - -
Mtr5g2552 786 MobiDBLite consensus disorder prediction 769 786 - -
Mtr5g2552 786 CDD B3_DNA 320 421 IPR003340 GO:0003677
Mtr5g2552 786 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Mtr5g2552 786 Gene3D - 300 425 IPR015300 -
Mtr5g2552 786 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 581 - -
Mtr5g2552 786 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 587 779 - -
Mtr5g2552 786 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Mtr5g2552 786 ProSiteProfiles B3 DNA-binding domain profile. 322 422 IPR003340 GO:0003677
Mtr5g2552 786 SMART B3_2 322 422 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2552 Mtr-Chr5 33350126 33356202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2552 3 706 B3 DNA Binding Superfamily AT4G32010 40.885 8.51e-175 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr5g2552 B3 1.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2552 - - lang:109356710 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1854 3 31239087 31246853 Mtr5g2552 5 33350126 33356202 PCT