Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2550 ATGCAACATCAATCTTCAAACCCTAATCCCAATTCAAATCCAAATCGACACAATGCATCTCAATTACCACCACCCCCACCACCTTCCACGGCGGCAGCAACCACCGCCAAACCCTCACTCTTCCCACGCACCACCAACGTCCCTTCCCACCACCGTCGAGCACACTCCGATCTCACATTCCGCTTACCTGACGACATGATGGACCTCTCCCCGTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCGGGTGGAAACGATGAGGGGGAGAAGAATCCGGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGGTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAGCGCAAAGTTCAAACCCTACAGACTGAAGCTACAACTCTTTCTGCTCAACTGACACTATATCAGCGAGACACGACAGGTCTGAGTACTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTTAATCTCGGTATGCACCAAATGCAATTTACAGAATCAGATTACGCTCCAATTCCACCACAAGGGCCTTCTGGTCACCGGAACATCCGGTTGCCATTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATTCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGGCTTGACATTAGTAGCAAAGGAACAGCTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 1077 0.4735 MQHQSSNPNPNSNPNRHNASQLPPPPPPSTAAATTAKPSLFPRTTNVPSHHRRAHSDLTFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEGEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESDYAPIPPQGPSGHRNIRLPLFGHSPSSMPSHQLHQTNSHSYSELLQNDQIGRFQGLDISSKGTAVVKSEDPSLSASESSTTF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2550 358 Coils Coil 177 204 - -
Mtr5g2550 358 MobiDBLite consensus disorder prediction 280 315 - -
Mtr5g2550 358 SUPERFAMILY Leucine zipper domain 161 212 IPR046347 GO:0003700|GO:0006355
Mtr5g2550 358 MobiDBLite consensus disorder prediction 111 129 - -
Mtr5g2550 358 PANTHER ATBZIP TRANSCRIPTION FACTOR 1 355 - -
Mtr5g2550 358 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g2550 358 MobiDBLite consensus disorder prediction 341 358 - -
Mtr5g2550 358 Gene3D - 161 211 - -
Mtr5g2550 358 MobiDBLite consensus disorder prediction 99 145 - -
Mtr5g2550 358 MobiDBLite consensus disorder prediction 338 358 - -
Mtr5g2550 358 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 355 - -
Mtr5g2550 358 Pfam bZIP transcription factor 161 216 IPR004827 GO:0003700|GO:0006355
Mtr5g2550 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 222 IPR004827 GO:0003700|GO:0006355
Mtr5g2550 358 MobiDBLite consensus disorder prediction 301 315 - -
Mtr5g2550 358 SMART brlzneu 157 221 IPR004827 GO:0003700|GO:0006355
Mtr5g2550 358 MobiDBLite consensus disorder prediction 1 86 - -
Mtr5g2550 358 CDD bZIP_plant_RF2 162 211 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2550 Mtr-Chr5 33337683 33341436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2550 11 358 bZIP Transcription Factor Family AT2G40620 50.503 4.25e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr5g2550 bZIP_1 3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2550 - - vra:106763153 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2550 5 33337683 33341436 Mtr5g2550 5 33337683 33341436 ECH
Mtr3g1843 3 31113032 31116151 Mtr5g2550 5 33337683 33341436 PCT