Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2549 ATGGCAGGAAAGAAAGTGAAGCTTGCATTCATAACCAATCACACAGCAAGAAGGGCAACGTACAAAAAAAGGGTACAAAGTTTGATGAAGAAGCTCAATGAAATCACAACCCTATGTGGAGTTAAGGCATGTGGTATAGTTTTCAAGCCTGATGATCTTGAACCACAAATTTGGCCATCCATTGAAGGAGTCCATAGCGTGCTGGTTCGATTCATGCAGACTCCGAACTTCGATCGAGACCGAAAGATGTTCGACCATGAGAGTTACTTGAAGGAAAGGATCCAAAAGTTGAATGAGAAGTTGAAGAAAAAAATGAAGGAGAATAGGATGATGTGGATGAGTGTTCAATTGCATCACTATCTTGAGGCAGGGAATGTTCCTGAGGATTTAAGCACTTCAGATATGAATGATCTCACATATGTGGTTGATGAGAAAATGAAGGAAATTAATATGAAGATGGTGCAATTGGAGAAGGATGAGAGGTCTTAG 489 0.4029 MAGKKVKLAFITNHTARRATYKKRVQSLMKKLNEITTLCGVKACGIVFKPDDLEPQIWPSIEGVHSVLVRFMQTPNFDRDRKMFDHESYLKERIQKLNEKLKKKMKENRMMWMSVQLHHYLEAGNVPEDLSTSDMNDLTYVVDEKMKEINMKMVQLEKDERS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2549 162 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 159 - -
Mtr5g2549 162 Coils Coil 87 111 - -
Mtr5g2549 162 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Mtr5g2549 162 CDD MADS_SRF_like 4 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr5g2549 162 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mtr5g2549 162 Coils Coil 146 162 - -
Mtr5g2549 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 - -
Mtr5g2549 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g2549 162 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Mtr5g2549 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2549 Mtr-Chr5 33335188 33335937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2549 1 153 Type I MADS-box Gene Family AT5G48670 40.523 2.46e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr5g2549 SRF-TF 5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2549 - - cam:101507243 206.453