Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2543 ATGGCATCTTCTACTTTGATAGCTATTATGTTCTTTCTCTTCATTGAAATGCACTTTCATGGTGTCATTGCTAACTATGGCGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGTGGTGATGCTTCTGCTACAATGGGAGGTGCATGTGGTTATGGAAATTTGTACAATCAAGGATATGGAACAAACACTGCAGCACTAAGCACAGCTTTGTTCAACAATGGTTTGAGCTGTGGGGCTTGTTATGAAATGAGGTGTGTTGGTGATCCAAGATGGTGCAAACATAGCACCATTGTTGTTACTGCCACAAACTTTTGTCCACCAAATTCTGCTTTGCCAAACAACAATGGTGGTTGGTGTAATCCTCCCCTACAACACTTTGATATGGCAGAACCTGCTTTCCTTCAAATTGCTCAATATAAAGCTGGAATTGTGCCTGTATCATTTAGAAGAGTGTCATGCATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCACTCTTACTTCAACTTGATTTTGATCACCAATGTCGCGGGAGCAGGAGATGCCCATGCAGTGTCAATCAAAGGGTCCAAAACTAGCTGGCAACCCATGTCAAGAAATTGGGGCCAAAACTGGCAGAGCAATTCCTACCTTAATGGACAAAGCCTCTCTTTTAAAGTAACCACTGGTGATGGTAGAACTGTGACAAGCTACAACGTGGCACCAGCTAATTGGCAATTCGGTCAGACCTTTCACGGGAGTCAGTTTTAG 756 0.4325 MASSTLIAIMFFLFIEMHFHGVIANYGGWQSGHATFYGGGDASATMGGACGYGNLYNQGYGTNTAALSTALFNNGLSCGACYEMRCVGDPRWCKHSTIVVTATNFCPPNSALPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPVSFRRVSCIKKGGIRFTINGHSYFNLILITNVAGAGDAHAVSIKGSKTSWQPMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVTSYNVAPANWQFGQTFHGSQF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2543 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Mtr5g2543 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Mtr5g2543 251 Gene3D - 159 251 IPR036749 -
Mtr5g2543 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Mtr5g2543 251 PANTHER EXPANSIN 5 251 - -
Mtr5g2543 251 PANTHER EXPANSIN-A15 5 251 IPR002963 GO:0009664
Mtr5g2543 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Mtr5g2543 251 Gene3D - 17 154 IPR036908 -
Mtr5g2543 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Mtr5g2543 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Mtr5g2543 251 SMART dpbb_1 64 149 IPR007112 -
Mtr5g2543 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Mtr5g2543 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Mtr5g2543 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2543 Mtr-Chr5 33292336 33294804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2543 5 251 Expansin Gene Family AT2G40610 78.226 9.05e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2543 - - gmx:100816848 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2543 5 33292336 33294804 Mtr5g2543 5 33292336 33294804 ECH
Mtr5g2543 5 33292336 33294804 Mtr3g1831 3 30942631 30944842 ECH
Mtr3g1830 3 30931351 30933354 Mtr5g2543 5 33292336 33294804 PCT