Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2530 ATGTTTGGATGTCCAGAGACAGTGGCAGAAAGATTAGATGAAATAGCAAAAATAAACTCAGAGGGAGAAACTTCTTCTCAAATGGGAAGGAAGCATCTTTATGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGATGTGCTGAGGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAATTTGCAGCTGTTCATAAAGTCTTTGGTGCTAGCAATGTCTCTAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCTAATTTAAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCATCATTACAACAACAAGTCCAATCTTTACAAGCAGAGTTGCATGCAGTAAGAACTGAGCTACTAAAATACAAATATAGAGAAGCAGCTAGTTTCATTTCTTCTCAAGTATCAATGCCTACAAGTGCAAACTCTCAACCTCTTCCTCTTCCTACGACTTTAGCTCCTCCGTCTCCAGCTCCTCCTCCGCCACAAAAAGTATTGGCTTCTCAATCTATTATCCTTTCGTCGTTGTCTTCGTCTTCAACTTCATCTGTTTACACTCCACCTAAAACAACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTGTTTAG 705 0.3929 MFGCPETVAERLDEIAKINSEGETSSQMGRKHLYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRTELLKYKYREAASFISSQVSMPTSANSQPLPLPTTLAPPSPAPPPPQKVLASQSIILSSLSSSSTSSVYTPPKTTMSHGSISSENIPYFV* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2530 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 233 - -
Mtr5g2530 234 MobiDBLite consensus disorder prediction 176 192 - -
Mtr5g2530 234 Pfam Lateral organ boundaries (LOB) domain 47 144 IPR004883 -
Mtr5g2530 234 Coils Coil 126 146 - -
Mtr5g2530 234 MobiDBLite consensus disorder prediction 205 228 - -
Mtr5g2530 234 PANTHER LOB DOMAIN PROTEIN 32 233 - -
Mtr5g2530 234 MobiDBLite consensus disorder prediction 205 234 - -
Mtr5g2530 234 MobiDBLite consensus disorder prediction 165 192 - -
Mtr5g2530 234 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2530 Mtr-Chr5 33162056 33163577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2530 6 162 AS2 family AT2G30340 68.712 2.24e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g2530 LOB 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2530 - - ccaj:109795340 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2530 5 33162056 33163577 Mtr5g2530 5 33162056 33163577 ECH