Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2510 ATGCTTTCAGGGGATATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTAAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGAATTTTGGACATTATTGCTCTGAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAATGCAGTCCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAAGTATGCTGATGAATCAAAACAATCTGCAGTGCCTAATGGTGGAACACATGGTGCAAGTAATGGTGGCTCAACAGCCTCATTCCGTCCAGGTTCTGGTGCCCAAGAGGCAGCTGCTCCCAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACTACCGGCAGGATGCTCGAAATGCTTTTCGAACAATACCCAGGTTTCAAGGAAGTACGCTTGATAGAAGCAAAGCCAGGTATCGCGTTCGTAGATTTTGAAGATGATGGGCAATCATCCATGGCAATGCAGGCTCTTCAAGGCTTCAAAATTACCCCTCAAAATCCCATGATCATAAACTTTGCTAAGAAGTAA 702 0.4017 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2510 233 MobiDBLite consensus disorder prediction 126 148 - -
Mtr5g2510 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 233 - -
Mtr5g2510 233 CDD RRM1_U1A_like 11 88 - -
Mtr5g2510 233 MobiDBLite consensus disorder prediction 99 151 - -
Mtr5g2510 233 CDD RRM2_U1A_like 157 228 - -
Mtr5g2510 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Mtr5g2510 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 233 - -
Mtr5g2510 233 Gene3D - 149 233 IPR012677 -
Mtr5g2510 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Mtr5g2510 233 MobiDBLite consensus disorder prediction 99 123 - -
Mtr5g2510 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Mtr5g2510 233 SMART rrm1_1 11 85 IPR000504 GO:0003723
Mtr5g2510 233 Gene3D - 4 109 IPR012677 -
Mtr5g2510 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Mtr5g2510 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Mtr5g2510 233 SUPERFAMILY RNA-binding domain, RBD 8 222 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2510 Mtr-Chr5 32925100 32931398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2510 3 92 Eukaryotic Initiation Factors Gene Family AT1G71770 32.609 1.96e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2510 K11094 - gmx:100805822 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2510 5 32925100 32931398 Mtr5g2510 5 32925100 32931398 ECH