Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2501 ATGGAGAATTTTAGGATTTTTTTCAAGTATTATGGGATTCATTTCTTATGCAAGCAGCTCTTCTTTCAATCATCTTTTTGGAAAGTGGAACTTCATCAAAATCATTATTTACACAGTGCTTCGAACGAAAAACCAGACCTATTGAGCATGATTTCTTGTGTTGCCTTTGCTTTAATGTCTTTTTGCTTATCAAGACAGATCGATCTTGGTTTTGAATCTGATCTCCTCAATTTCTTCCTTGGAATTTTAACCGTTCAATTGATGAAGATCAATTTGATTCTATCTATTGTTGCTGCAATCTTATGTTATTCTCTTATTGTTCTTCGTTCGAAATTGGGTTCGAGGCATGAAATAGGAACTTTGAGAGTAGAAGATGATGTAGCTATAGAAATTGATGGTGTAGATAACAATAGAAATGAATTTCAATCTGATTATAGTAATGGTCGCCAACAAAATAAGTCGTCAGTAAGAAGGATGAATCATGATGATGGGTATAATTGGAAAAAGTATGAAGAGAAAGTAGCAAAAGGAAGTGAAAATCAAAGAAGCTATTATAAATGTACATGGCCTAATTGTTTTGTGAAGAAAAAGGTTGAGAGAACAATAGATGGAGAAGTTATTGAGACACTATACAAAGGTACACATAATCATTGGAAGCCAACGTCTTCAATGAAGAGGAATTCATCATCTGAGTATCTTTATTCACTTTTACCTTCCGAGACGGGCTCCATTGACTTGCAAGATCAATCATTTGGAAGTGAACAATTGGATTCTGATGAAGAACCTACGAAGTCTTCGGTATCGATATGA 810 0.342 MENFRIFFKYYGIHFLCKQLFFQSSFWKVELHQNHYLHSASNEKPDLLSMISCVAFALMSFCLSRQIDLGFESDLLNFFLGILTVQLMKINLILSIVAAILCYSLIVLRSKLGSRHEIGTLRVEDDVAIEIDGVDNNRNEFQSDYSNGRQQNKSSVRRMNHDDGYNWKKYEEKVAKGSENQRSYYKCTWPNCFVKKKVERTIDGEVIETLYKGTHNHWKPTSSMKRNSSSEYLYSLLPSETGSIDLQDQSFGSEQLDSDEEPTKSSVSI* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2501 269 ProSiteProfiles WRKY domain profile. 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2501 269 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 146 268 IPR044810 GO:0003700
Mtr5g2501 269 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 146 268 - -
Mtr5g2501 269 MobiDBLite consensus disorder prediction 244 269 - -
Mtr5g2501 269 MobiDBLite consensus disorder prediction 140 161 - -
Mtr5g2501 269 Pfam WRKY DNA -binding domain 162 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2501 269 SUPERFAMILY WRKY DNA-binding domain 158 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g2501 269 SMART WRKY_cls 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2501 269 MobiDBLite consensus disorder prediction 140 154 - -
Mtr5g2501 269 Gene3D WRKY domain 146 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2501 Mtr-Chr5 32789525 32790742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2501 162 247 WRKY Transcription Factor Family AT2G38470 42.529 6.61e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g2501 WRKY 2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2501 K13424 - ccaj:109792596 271.166