Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2486 ATGGTGCATACTCTAATCCAAACATGGAGATGGATGATGTTGCCAAAGGTGTGGAGATTTGTGGGCTTTGCTTCATCTCTTGTTGGACTTGTTTGCTATGCATTAAGCTCTTCCTTTAACTATCTCTTTGGAGAATGGAATTTGTTGAAAATATTTCTTTACAGCGCTTTCAGTTTCATCATCTGCTTGGTGATTTTATTTGCAAAGAAATTGCAACATTCTAGCAGTCTTCGATTCAAAGCTCATTCGGCATTTCTGGTATTGACACTCACTTCAATCTATTCCTTTTTCTTTGATAAAGTCATGAATGGGAAACCAGATGCATATAGTTTAATTTCATGTGCTGCCTTTGCTATTATGTCACTTAGTTTGTCAAGGCAAACTCAGTGGGGATTTGAAATTGATCTTCTTTATTTTTTCCTGGGATGTCTAATTGTTCAACTCATGAAGATTAAGTTGCAGTTATTAATTCTTGGAGCTGGTTTTAGCTATTGCCTTATCATTCTCCGTTCTTCATTTTCTTCGCTAGATACCGGAGAAAATAGTCAATACAGCTCTGAACTCCAAGATGAGAATTCGGTGATTCTTTATGTGGATTCTCTGCAATCACCCGGTGTTAATAATAATATTTCTCTGCAATCTCCCAGTGTTAATAATAATATTTCTAGTGCTACCAGTAGCATTGATTCACCACAATTGGTTATCAGTACTAATGTTGGTAGTATGATGGAACAACTCGGGACTTATGTGAAGGCGCTTGAGCACGAAAATTCAAATCTCATTCAAGTTATTTCGGAGCATGTAGAAAAATACGTTGAAGAACACTCTCAATTGGTGGTGACCGATCCAAACCTAATGATGGATGCGTTGAAGCCTCAAACCATTAATGACCTTGAGGAAATAGCAAAGGTCATGTGTATGGCTGGGTTTGAGAAGGATTTTTCCGATGTGTACAACAATTGCCGGAGGGAATGCTTGGACAAGTGCCTAATGCATAAATTATTCGGCTTACAGAAGCTCAGTATTGAGGACGTTCACAATATGTCATCGAAGGATCTTGAAGACAAGATTGAAAGATGGATTAGAACTTTCAATGTCGCTCTCAAGGTACTTTTCCCTAGCGAGCGAAGACTTTGTGACCGCATCTTCTTTGGATTCTCATCCGCGGCTGATTTCTCCTTCATGGAGATTTGCAGGGAATCCACCATTCAACTTCTAAACTTTTTTGATTATGTGTCCAGTGGAAGTCACTCACCAGAGCGTTTGTTTAAAATCCTTGAGGTTTTTGAAACATTGCGAGATATGATTCCAGAATTTGCATCCTTATTTTGTGATCAGTACAGTATGTCTCTAAGGAATGAAGCAACTGCTATATGGAAGAGATTGGGGAAAACAATTAGGGACATATTTAAGGAGTTGGAGTATTTGATTGGTCGAGATCTGACGAAGGTGATAAATTTTGGTGGCGGTCTTCAACCGATTACCCAACACGTGATGAACTACCTCCGTGTAGTTTGCCGATCCCAGCAAACATTAGAGCAAGTCTTCTACGATTCCTCACTTTCTTCGAAGATTCATAGGATTATCGATACATTGGAGAGCAATTTGGAAGCAAAGTCCAAATGCTACGTGGATCCTTCTTTAGGCTATATATTTTTGATAAATAACCACACATATATAGTTGAGATGACCAAAGATAATGAACTAGGAACCCTTTTGGGGGATTATTGGCTCCAAAAATACACTGAGAAAGTTTGGCATTACCATAGACAATATCATAAAACCAAGGGAGCGATCGCCTCATCTGTAGTGCTAGATTTTTTCCGGTCAAATTATGAAAGAATTAGAAATATCAAAGGTGGGGAAGTATTAGAGGTGTATCAAGAAGATATGAAAGAAATAGAAATATCACCCTTGCAACCAGGAGAAAGGAGAAAGAAATTGGAGACAGAGATAACAACAATAGTGATCTCTCCCGAACCCCAGTTTGGGAACACATACAAAATGCCACCGGAAGACGGGTTTACCTGGACAAAATATGGCATGAAAGAGATACCTGGCTTCATATACCCTAGGAGTTATTACAGGTGCAACCACGTGAAATTATATGCGTGTCGAGCCAAGAAGAAAGTACAACAACTTGGTGACCATCCAAACATATTTGAAGTTAGATACAACGGTGGACATACCTGCCGCATGTCCTTAACAATACCATCATTATTTGTACCAGCACGTCAACCACTGGATATCTCTATAGATGGTATTCAAAGCACCATGCCTACATCGTCTACTTTATATTCTAGGAGGATTTCATCAGGCATGCCAGGAAAATCCATAAACTCTATGCCAGAAGCCAAGTTAGCTGCTCCATCAAAGTCTGAAGAATATGCAGACCCTTTTTTGCGTCGTTTTTTCATAACAGGAAAATCCATAAACTCTATGCCAGAGGCCAAGTTAGCTGCTCCATCAAAGTCTGAAGAATATGCAGACCCTTTTTTGCGTCATTTTTTCATGACAGGAAAATCCATAAACTCTATGCCAGAGGCCAAGTTAGCTGCTCCGGCGGATGGTGGGCATCACCTTATGATGGCGAAAATTATGGCCTATCTTCTTTTTGCTATAAGATCACAACATATCAAAGTTGTTAATAGAGACAGAACATTTTCAATACAAACTGAGGGGACAATGGAACTTTTAGAGAGCATATTAGCATCAAAGTCTGAAGAATATGCGGACCCTTCTTTGCGTCATTTTTTCATGATGAACAATTGGAAATATTTAGAAGTGACAAATAGACCAAGTGATATGGATGCAGTTTTTGGCGATGATTGGTTACAAAAAATCAGAGCAAAGGTCCAACAAAACATTGAACTCTATCAAAGAAACTCATGGGATAAGGTGTTAGAATTTTTGAAGTTGGATATCAATGATTCCATGGAAGTTAATTTTGTAGTAGATTTGATGAAAGAAAAGATTAGTTTGTTTAACAAGCACTTTACAGAGACATGCAGAGTTCAGTGCACATGGTCCATTCATTATTATAAGCTAAGGAAAGAAATGATTGAATCTCTCAAGAATACCTTGCTCCCAGCGTATGGAATCTTCATTGGGAGGTTTCAGGATTTTCTTAAAACTGATGCTTATGAGTATATTGAGTATGGAATGTTTGACATTCATGACATACTTGATAATTTGTTTCTTGGAAACAAGAAAAACAAATGA 3222 0.3833 MVHTLIQTWRWMMLPKVWRFVGFASSLVGLVCYALSSSFNYLFGEWNLLKIFLYSAFSFIICLVILFAKKLQHSSSLRFKAHSAFLVLTLTSIYSFFFDKVMNGKPDAYSLISCAAFAIMSLSLSRQTQWGFEIDLLYFFLGCLIVQLMKIKLQLLILGAGFSYCLIILRSSFSSLDTGENSQYSSELQDENSVILYVDSLQSPGVNNNISLQSPSVNNNISSATSSIDSPQLVISTNVGSMMEQLGTYVKALEHENSNLIQVISEHVEKYVEEHSQLVVTDPNLMMDALKPQTINDLEEIAKVMCMAGFEKDFSDVYNNCRRECLDKCLMHKLFGLQKLSIEDVHNMSSKDLEDKIERWIRTFNVALKVLFPSERRLCDRIFFGFSSAADFSFMEICRESTIQLLNFFDYVSSGSHSPERLFKILEVFETLRDMIPEFASLFCDQYSMSLRNEATAIWKRLGKTIRDIFKELEYLIGRDLTKVINFGGGLQPITQHVMNYLRVVCRSQQTLEQVFYDSSLSSKIHRIIDTLESNLEAKSKCYVDPSLGYIFLINNHTYIVEMTKDNELGTLLGDYWLQKYTEKVWHYHRQYHKTKGAIASSVVLDFFRSNYERIRNIKGGEVLEVYQEDMKEIEISPLQPGERRKKLETEITTIVISPEPQFGNTYKMPPEDGFTWTKYGMKEIPGFIYPRSYYRCNHVKLYACRAKKKVQQLGDHPNIFEVRYNGGHTCRMSLTIPSLFVPARQPLDISIDGIQSTMPTSSTLYSRRISSGMPGKSINSMPEAKLAAPSKSEEYADPFLRRFFITGKSINSMPEAKLAAPSKSEEYADPFLRHFFMTGKSINSMPEAKLAAPADGGHHLMMAKIMAYLLFAIRSQHIKVVNRDRTFSIQTEGTMELLESILASKSEEYADPSLRHFFMMNNWKYLEVTNRPSDMDAVFGDDWLQKIRAKVQQNIELYQRNSWDKVLEFLKLDINDSMEVNFVVDLMKEKISLFNKHFTETCRVQCTWSIHYYKLRKEMIESLKNTLLPAYGIFIGRFQDFLKTDAYEYIEYGMFDIHDILDNLFLGNKKNK* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2486 1073 SUPERFAMILY Cullin repeat-like 249 594 IPR016159 -
Mtr5g2486 1073 SMART WRKY_cls 671 733 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2486 1073 SUPERFAMILY Cullin repeat-like 854 1066 IPR016159 -
Mtr5g2486 1073 Pfam WRKY DNA -binding domain 672 732 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2486 1073 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 595 IPR004140 GO:0000145|GO:0006887
Mtr5g2486 1073 PANTHER EXOCYST COMPLEX PROTEIN EXO70 836 1066 IPR004140 GO:0000145|GO:0006887
Mtr5g2486 1073 Gene3D Exocyst complex component Exo70 840 1073 - -
Mtr5g2486 1073 Gene3D Exocyst complex component Exo70 232 633 - -
Mtr5g2486 1073 SUPERFAMILY WRKY DNA-binding domain 670 733 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g2486 1073 Pfam Exo70 exocyst complex subunit 885 1063 IPR046364 GO:0000145|GO:0005546|GO:0006887
Mtr5g2486 1073 Pfam Exo70 exocyst complex subunit 358 593 IPR046364 GO:0000145|GO:0005546|GO:0006887
Mtr5g2486 1073 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 836 1066 - -
Mtr5g2486 1073 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 25 595 - -
Mtr5g2486 1073 ProSiteProfiles WRKY domain profile. 672 734 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2486 1073 Gene3D WRKY domain 664 734 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2486 Mtr-Chr5 32609653 32617532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2486 280 595 EXO70 exocyst subunit family AT5G58430 59.077 2.24e-116 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g2486 Exo70 1.5e-62 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2486 - - mtr:MTR_5g073620 2140.93