Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2481 ATGGCACAATTGGAGAACCCAGTGGCTATCGATAGAATCAGCAGTTTACCTGACGATATATTATGTCACATACTCTCTCTTCTTCCTACCAATCTCGCTTTCACCACCACCGTTCTTTCCAAACGATGGACACAACTCTGGTATTCACTCGCTTCTCTCCGCTTCGACAATGAGAAAATTGTGCGACACCTCGACAATTACAATCGCTTCAGTTGTATGGTGGATGCAGTCATGATTTCTCTTCGGGAAACAAACCAAACCATGAAAACATTTCATGTTAACTGTGGTTTTGTTTACTGTAAGACTGGTCAGCGCATTTTTGATGCATGGGTAGAAGCCGCTAAACAGCGCCGAGTTGAGGAATTTAATCTCTCCATCATCAGTGGTATCACCTTGATATTGAATCCCACAATTTTAACCTCCCAAACCCTAGTTATTCTGAAACTTGAGAGATTAGTAGTTAAAGCTGAAAATTTGTGTGTTGATCTTCCATCTCTCAAAATCCTACATTTGGTAGAAATCTGTTTTAAATACAAGAATGATTTCATGAAACTTCTTAATGGATGTCCTGTTCTAGAAGATTTACACACGAGAGTTGAAGAAAATAATGCAGCGGAAGGGTTTAAACCCTTGTCCAAGTTGGTCAGAGCAGATATCAATTCATATGATGTTCCCTTTGATGCAATTAATAATCTTGAGTTTCTTTGCATAAGAGTGGCACCAGAAAATACTTTCAAAACCATTCCATTGTTTCAAAATTTAATTCACATTAAACTATGGTTGTATGACTTCATTCATGGCTGGGATGGTGTGGTAGAATTGCTCCAGCATTGCCCAAAGCTTCAAGTTCTTTTTGTGAGAAGGATGAACATCCCTCGAAACTATTGCCATGAACATGCACTGGAGTATCTTGTTAAGGGAGTGAAACTTGCATCTCGGTACGATAACAGCATAAAGTACGATGAGTTTTTAAAACTCATAAGAGATTTCAAGGCTGGAAGAATTGATATACGAGGCGTCCAATCAAGGGTGAGGGTGCTGCTTCAAAGGCATCAGGGTTTATTATTCGGATTCAAGACCTTCCTCATCATGCCAGCTGGTTCGTACTCTTTCCACGGTAATTCACATGATATCTTGATAGTTGTCTGCCCTTTACCTATATACGAGGAGGGATCAAATTACACCGATGAAATCTTACACTGCTCAATATAG 1212 0.396 MAQLENPVAIDRISSLPDDILCHILSLLPTNLAFTTTVLSKRWTQLWYSLASLRFDNEKIVRHLDNYNRFSCMVDAVMISLRETNQTMKTFHVNCGFVYCKTGQRIFDAWVEAAKQRRVEEFNLSIISGITLILNPTILTSQTLVILKLERLVVKAENLCVDLPSLKILHLVEICFKYKNDFMKLLNGCPVLEDLHTRVEENNAAEGFKPLSKLVRADINSYDVPFDAINNLEFLCIRVAPENTFKTIPLFQNLIHIKLWLYDFIHGWDGVVELLQHCPKLQVLFVRRMNIPRNYCHEHALEYLVKGVKLASRYDNSIKYDEFLKLIRDFKAGRIDIRGVQSRVRVLLQRHQGLLFGFKTFLIMPAGSYSFHGNSHDILIVVCPLPIYEEGSNYTDEILHCSI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2481 403 PANTHER CYCLIN-LIKE F-BOX 10 297 - -
Mtr5g2481 403 SUPERFAMILY F-box domain 10 72 IPR036047 GO:0005515
Mtr5g2481 403 SUPERFAMILY RNI-like 114 291 - -
Mtr5g2481 403 Gene3D Paired amphipathic helix 294 364 IPR036600 GO:0006355
Mtr5g2481 403 ProSiteProfiles PAH domain profile. 287 365 IPR003822 GO:0006355
Mtr5g2481 403 PANTHER OS04G0267775 PROTEIN 10 297 - -
Mtr5g2481 403 Pfam Leucine Rich Repeat 165 190 IPR013101 -
Mtr5g2481 403 SUPERFAMILY PAH2 domain 314 362 IPR036600 GO:0006355
Mtr5g2481 403 Gene3D - 1 53 - -
Mtr5g2481 403 ProSiteProfiles F-box domain profile. 10 58 IPR001810 GO:0005515
Mtr5g2481 403 Pfam Paired amphipathic helix repeat 319 362 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2481 Mtr-Chr5 32553816 32556621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2481 8 195 EF-hand Containing Proteins AT5G41840 35.922 2.95e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g2481 PAH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2481 - - mtr:MTR_5g061680 369.007