Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2458 ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGAAGCTACCACTCAAATACCATCAAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAGTACTTGAACATCGTCGAAGAAGAAGAAGAAGAAGAAGAAAAGGTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAAGGATTTTCCTTTGATGAAGGGAAAGATGAGAACATAAGCAAATGCAATTATGAGGAGAAGAAAATAATAAAGAGAGAAAATTACAATGATGGTTTTTGGGAAGTGGATGATGAAAAGAGTTTGGCTTTGAATTTGAATTTGAACTATCAAGAGGTTTTGGATGCATGGTCTAACCGTGGCTCTCTTTGGGCCAATGATTGTTCTCTTTCATTTTCCTCCTCCAATAATGGCTCCTATATGGGAGAAGTGCCAATATTAGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTACAAAGAAAAACGTCAAAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA 654 0.3624 MRYTSSLRSPKKEEHEVPEATTQIPSNFNKSYTNEDFYLFDELEEYLNIVEEEEEEEEKVSSPQNTCNSSNELHWDIMEWEGFSFDEGKDENISKCNYEEKKIIKRENYNDGFWEVDDEKSLALNLNLNYQEVLDAWSNRGSLWANDCSLSFSSSNNGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2458 217 MobiDBLite consensus disorder prediction 1 19 - -
Mtr5g2458 217 MobiDBLite consensus disorder prediction 1 30 - -
Mtr5g2458 217 Pfam CCT motif 174 216 IPR010402 GO:0005515
Mtr5g2458 217 Coils Coil 40 60 - -
Mtr5g2458 217 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 217 - -
Mtr5g2458 217 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Mtr5g2458 217 PANTHER CCT MOTIF FAMILY PROTEIN 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2458 Mtr-Chr5 32272468 32274327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2458 94 216 C2C2-CO-like Transcription Factor Family AT1G73870 43.262 3.33e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g2458 CCT 2.2e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2458 - - gmx:100801038 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2458 5 32272468 32274327 Mtr5g2458 5 32272468 32274327 ECH