Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2454 ATGGCAAAGTATTGGTTTCTTAATGTATTGATTATTGTGTCCTATCTTTGCAATCTGGTAGTTGAAGGGTACCCTATTGAGGATCTGGTTGTTAGTCTTCCAGGTCAACCTAAAGTTGAATTCAGTCAATATGCTGGTTATGTTGATATTGATGTAAAACATGGTAGAAGCTTGTTTTATTATTTTGTTGAAGCTGATCATAAACCTCAAAATAAACCCCTCACTCTTTGGCTCAATGGAGGTCCAGGTTGTTCCTCCATTGGAGGAGGTGCCTTTACTGAATTGGGTCCGTTTTTTCCTGCCGGTGATGGACGTGGTTTACGAACGAATTCAATGTCTTGGAATAGAGCTTCCAATCTTCTCTTTATTGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCCGATTATAACATCGGTGACGCCTCAACAGCCAATGATATGCTTTCGTTCTTCCTGAAATGGTTCGAGAAGTTTCCTACATACAAATCCAGAGCGTTGTTTCTTACCGGAGAAAGCTATGCAGGACATTACATACCTCAGTTAGCTAATGCTATTCTTGATTATAATGCTCATTCAACCGGTTACAAATTCAATTTGAAGGGAGTTGCTATAGGAAACCCACTTCTGAATCTTGATCGCGATGCACAAGCAACATATGATTATTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTTGCCATTACAAAAGATTGCGATTTTGATGATTATACCTTTGCATCTCCTCATAACGTATCTGCATCATGCAACACTGCCATCAATGATGCAAATGAAGTTGTCGGCGATTATATAAACAACTATGATGTGATTCTCGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAGATTGAAAAAGATGGCTACTAAAATAAGTGTAGGTGTAGATGTCTGCATGAGTTATGAAAGAAAATTTTACTTCAATCTCCCTGAGGTTCAAAAGGCTCTCCATGCGAACCGTACCAATTTGCCGTATTCATGGTCCATGTGCAGTGGTGTTTTAAATTACAGTGATACAGATCCTAACATTAATATGCTTCCAATTCTCAAACGGATTGTTCAAAACCATATTCCAGTATGGATTTTCAGCGGAGACCAAGATTCCGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAACTGGCTGATGACCTGAAGTTCAAGGTTACAGTTCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGCAACCGAGTATGGAAATTTGTTAACTTTCGCCACCGTGCGGGGTGCAGCTCACATGGTACCGTATGCACAACCTTCTAGAGCACTGCATCTTTTCAGTAACTTTGTGAATGGTAGGAGGTTGCCAAACACAACAAGACCTTCTATTGAAGGATGA 1413 0.4041 MAKYWFLNVLIIVSYLCNLVVEGYPIEDLVVSLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADHKPQNKPLTLWLNGGPGCSSIGGGAFTELGPFFPAGDGRGLRTNSMSWNRASNLLFIESPAGVGWSYSNTTSDYNIGDASTANDMLSFFLKWFEKFPTYKSRALFLTGESYAGHYIPQLANAILDYNAHSTGYKFNLKGVAIGNPLLNLDRDAQATYDYFWSHGMISDEIGLAITKDCDFDDYTFASPHNVSASCNTAINDANEVVGDYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSYERKFYFNLPEVQKALHANRTNLPYSWSMCSGVLNYSDTDPNINMLPILKRIVQNHIPVWIFSGDQDSVVPLLGSRTLIRELADDLKFKVTVPYGAWFHKGQVGGWATEYGNLLTFATVRGAAHMVPYAQPSRALHLFSNFVNGRRLPNTTRPSIEG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2454 470 Pfam Serine carboxypeptidase 35 457 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 Gene3D alpha/beta hydrolase 26 287 IPR029058 -
Mtr5g2454 470 Gene3D - 311 347 - -
Mtr5g2454 470 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Mtr5g2454 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 464 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 PANTHER CARBOXYPEPTIDASE 6 464 - -
Mtr5g2454 470 SUPERFAMILY alpha/beta-Hydrolases 20 464 IPR029058 -
Mtr5g2454 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Mtr5g2454 470 Gene3D - 358 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2454 Mtr-Chr5 32195769 32199732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2454 317 460 Calmodulin-binding Proteins AT2G22960 26.389 1.76e-11 61.2