Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2437 ATGATATCTGAAGTAAGAAATGATGTTAGTGATTGGCCCTTGCCTCAAGTCACTAACGTTGATGAATGGGTTCCTTTTGAAGGGCAACTATTTGAAGATAATGAATATGTAAATTCTTTAACATTTCAAGAGCTACAACATGAACCCTTGCCTCAAGTCAACAACATTGATGAGGGGGTTCCTTTTGAAGGGCAAGTATTTGAAAGTGATAATGTTGCTTATGAATTTTATTGTTTATTTGCAAAACAAAATGGATTTTCTATTAGGCGTGATCACATTTATAAATCTAGTAAAAATGTGTCTGAAGAGAATCCATCTGGTGTTTATAAGAGGGAATTTATTTGTCATGGTGGTGGTATTGTTAAACCACGCAAAACTGTTGAAGTGGAAAATCAAAGGAAACGAAAATCTTCAAGATGTGATTATGGTGCAAAGATGGTAGTTAATAAGAGAACAATTGGCTTTGAGAAAAAATGGGTGGTTAAATATTTCAACAATTCTCACAACCACGAGTTATTGGATAACAAAGAGGTTCGATTTCTTCCTGCTTATCGTAACATTCCAATTGTTGATCAAGATCACATACTATTATTATCTAAAGTTGGTTGCTCTGTAAGTATTATAATGAGAGTGCTTGAGTTAGAGAAAAGAACGGGCACAGGAAATTTACCATTCTTAGAAAAAGATATTAGAAATTTTATTCAGTCATATAGTGGTATTGGTAAAGAAAGTGATGCTGCAGATGTTCTCAGATTGTGCAAAAGTTTGAAAGATCGAGAGGAGGCCTTCCAAGTTGAATTCACAATTGATGAAAGTAACAAATTGGAGCATATTGTTTGGGCATTTGGTGATTCAATTCGCGCATACGAAGCTTTTGGAGATGTTGTAGTTTTTGATACCACATATAGAATAAACCGTTATGGGATGCCTCTTGGAATATGGAGTTTCCTAGCTTTTGTGAAAGGAAAATATCCAAAAATAATTCTTACCGATCAAGATCTTTCAATTAAAGAAGCCATTGCAACGGAATTGCCAAACACAAAACATGCATTTTGTATATGGCATATTGTCGCAAAGCTGTCAAGTTGGTTTTCTTTTCCACTAGGTTCGAGATATGATGACTTTAAACATGAGTTTCATAAGGTTGGTGTTGCTGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCACGAATGCGTCAAAAGTATCATAATCCTCATATTACAACACATTTTCCTATTGAAGAACATGCCTCGTCTATACTCACACCTTATGCCTTTAAGTTGCTTCAATATGAGATCGAATTATCCGCAAAGTATGAAGCAATTGAAGCTGACAATGGCTCTTATGTTGTGCAACATCATACCAAAGTTGATGGTGGTCGTATAGAATACTATGTAGACATGCAATTCGAGTGCTAA 1419 0.351 MISEVRNDVSDWPLPQVTNVDEWVPFEGQLFEDNEYVNSLTFQELQHEPLPQVNNIDEGVPFEGQVFESDNVAYEFYCLFAKQNGFSIRRDHIYKSSKNVSEENPSGVYKREFICHGGGIVKPRKTVEVENQRKRKSSRCDYGAKMVVNKRTIGFEKKWVVKYFNNSHNHELLDNKEVRFLPAYRNIPIVDQDHILLLSKVGCSVSIIMRVLELEKRTGTGNLPFLEKDIRNFIQSYSGIGKESDAADVLRLCKSLKDREEAFQVEFTIDESNKLEHIVWAFGDSIRAYEAFGDVVVFDTTYRINRYGMPLGIWSFLAFVKGKYPKIILTDQDLSIKEAIATELPNTKHAFCIWHIVAKLSSWFSFPLGSRYDDFKHEFHKVGVAVKIRNQAGEEARMRQKYHNPHITTHFPIEEHASSILTPYAFKLLQYEIELSAKYEAIEADNGSYVVQHHTKVDGGRIEYYVDMQFEC* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2437 472 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 60 314 - -
Mtr5g2437 472 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 316 381 - -
Mtr5g2437 472 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 386 461 - -
Mtr5g2437 472 Pfam MULE transposase domain 314 358 IPR018289 -
Mtr5g2437 472 Pfam FAR1 DNA-binding domain 75 173 IPR004330 -
Mtr5g2437 472 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 316 381 IPR031052 GO:0006355
Mtr5g2437 472 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 386 461 IPR031052 GO:0006355
Mtr5g2437 472 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 314 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2437 Mtr-Chr5 31984255 31986177 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr5g2437 FAR1 1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2437 - - ccaj:109802755 636.721