Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2432 ATGCTAAACCAACCCAACTCAGAAAACTCATCCACCAATCCATTGAATCAACTAGCACAAAACATGTCCTCCGACAACTACATCATGCTTGCAGCAATCATTTCTCTCCTCCTAGTAATCATCTTTGTCCTCCTTCTTCACCTCTACGCCAAATGGTTCCTAGCTCAATCCAATCCTCGCAGTCCGGTGAACCTCTCCGACATTCCAATATCTCCCAACTTCCACCACCATTTCAACATCCAATCCCCACCATTTAAAGGACTCAACTCAACAACACTTTCAACCATTCCCACGTTTGTGTCTGAAGAAAAAACACAAGAACTAGAATGTGTGATTTGTTTGAGTTACATTGAAGAAGGAGAGATTGGAAGAAAGTTACCAAAATGTGGACATGCTTTTCATGTTGAATGTATTGATATGTGGCTGAATTCACATTGTAACTGTCCCATTTGTAGAGGTTTGATTGTTGAGGAAGATTCTCATGGTGGTAATGTTGTTGAGATTGTGATTGATACTCCAAGTTATAGTGAGAGTGGTTCTGTTTCTGTTTCAGAAACTAGTTCTTTATCTTTGTTTGGATTTTCTTTCAAGAGAATTCTTAGCAAAGTTTTTCTTTCTTCACATGTAAATGAATTAGATAATGGTTCACAATGA 654 0.3838 MLNQPNSENSSTNPLNQLAQNMSSDNYIMLAAIISLLLVIIFVLLLHLYAKWFLAQSNPRSPVNLSDIPISPNFHHHFNIQSPPFKGLNSTTLSTIPTFVSEEKTQELECVICLSYIEEGEIGRKLPKCGHAFHVECIDMWLNSHCNCPICRGLIVEEDSHGGNVVEIVIDTPSYSESGSVSVSETSSLSLFGFSFKRILSKVFLSSHVNELDNGSQ* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2432 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Mtr5g2432 217 CDD RING-H2_EL5_like 109 152 - -
Mtr5g2432 217 SMART ring_2 110 151 IPR001841 -
Mtr5g2432 217 SUPERFAMILY RING/U-box 100 158 - -
Mtr5g2432 217 PANTHER - 7 209 - -
Mtr5g2432 217 Pfam Ring finger domain 109 152 IPR001841 -
Mtr5g2432 217 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Mtr5g2432 217 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 209 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2432 Mtr-Chr5 31893565 31894675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2432 28 170 Rapid Response to Elicitors AT3G16720 35.669 1.91e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2432 - - mtr:MTR_5g071930 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2432 5 31893565 31894675 Mtr5g2432 5 31893565 31894675 ECH
Mtr3g1721 3 29392391 29393352 Mtr5g2432 5 31893565 31894675 PCT