Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2421 ATGGATTTGATATCAACTTCATCTGAGAGTGGACAACTGAGTGTTGAAGCTTCATCACTGATTCATGCTGAGAGTGGACAACTGAGTGTTGAAACTTCTTCAATGATTCATACTGAATGTTACTCCCCTAGCAATGAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATCAAAGAGGTTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAATAAGAAATCAGAAAAGATACATTATTTGCGTTATGTTTGTAACAAACAAGGTTACAAGAAGGGAAGTTTGCTTAATCCTAACAACAGGCCAACATCAGACAGTCCACTGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTCGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATTTATAGATGGGATGTGGCTCACTGTCATCCATTACATAAACCAGAGCATTTGTGTTATCTGAGACCATTAGAACCATGTACCAATAATAATTTTTGA 567 0.3492 MDLISTSSESGQLSVEASSLIHAESGQLSVETSSMIHTECYSPSNEESWKSLVFQSIKEVEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSEKIHYLRYVCNKQGYKKGSLLNPNNRPTSDSPLVIEFVKVKEKPEERVGCKAGIYLKLDEVLNVYKIYRWDVAHCHPLHKPEHLCYLRPLEPCTNNNF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2421 188 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 7 169 - -
Mtr5g2421 188 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 7 169 - -
Mtr5g2421 188 Pfam FAR1 DNA-binding domain 62 169 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2421 Mtr-Chr5 31737364 31739534 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr5g2421 FAR1 1.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2421 - - mtr:MTR_0558s0020 311.997