Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2418 ATGAGTTCATGGGTGAGAGGCAAGTGTATTGGTAAAGGAGCGTTTGGCGTTGTGAATTTAGCTTATTCAAAAAGCGATTCTAAAGTTTTCGCGGTGAAATCAGTTGATACTAAAACTGCTCTTCCAAGTCAGTTAGAAGCGTTGGAGAATGAGATTAAGATTTTGAAACGGTTATCTTCTTCTTCTTGTTCTTCTTCGCCTCACGTGATTGGTTTTCTCGGCGAAGATGTCACGTGCGAAGGAAATAAAACGTCGTCGTTTAAGAATCTACACTTGGAGTACATGCCAGGTGGCACCGTCGCTGAAATCAACCGTGCTGACGTGGATGAAAAGTTAGTTAGAAACTTCGCCTGGTGTTTAGTTAACGCGTTACGTGATGTTCACGCGCGTGGCGTTGTTCATTGTGATGTTAAAGGAAGAAACGTTCTCATCGGTGGTTCCGTCGCTAAGCTAGCTGATTTTGGTTCAGCTATGGAATTTTCCGGTGGTGAATGTGAAGTACCACGTGGAAGTCCGATGTGGATGGCGCCGGAGGTTGTTCGCCGGGAGTATCAAGGACCGGAGTCTGATGTCTGGTCATTAGGATGTACTGTAATTGAGATTTTCACCGGAAAATCACCGTGGGAGGATCGGGGATTCGAGACGTTGAGTCGAATTGGATTTTCCGATGAGTTACCGGAGTTTCCAAGCGGTTTGTCGGAGCTCGGGAGAGATTTTCTGGAGAAATGTTTGAGGCGTGATCGGAATCGGAGATGGAGGTGTGATCAGCTACTTCAGCATCCATTTTTGTTACCGTGTGATCGCGTAGTTGAAACTTCGCCACGTTGCGTTTTGGATTGTGAAGAAAACGAGTTTGAATTTGAAGAAGAAAATGAAGTGAAGTTGAATAGTGATGAAAATGAAAATTCAGGTAAAAATAGAATTGGTAAATTAGCAACGGGAATGAGGGTAAATTGGGAAACGGAAGATTGGATTGAAGTGAGGGCAATTTCGTCTGAACAAAAAGAAGAAGCAACAATGGAAAATGAAGAGTATGAGTGTGACTGTGAGGGGGAAGAAGCTGAATCAGGGGTAATATGGGAAATTGAGAATATAATGAGGGTAGAAGAGGAAATGGAAGTTGGGAGTAATTCGGAATATGGGGATTCTGATGAAAGGGTAAAATGGGAAATGTGGAAATACAACCGCAACCGTAGGAACAACGTTATAGGTGGAAGTGGAAGTTGGTCTGGTTGGAGATGTCGGTATAGATACGGTTGGGGAAATTTTAATAGGAATATTAGTGGAATATTCAGCATTTGCACTTGTTGTAATAATTGTAAATTATTCAAATCATGTAAATTGTTCTCAATATATAATAATTGTTATTATTCCTTGTGGTTGAAAATATTCTTTAATTGGTGTTTCAAATTGAGATTCATGTTAAACATGGTTAAGAGTGTTTTTATTTTAAAGTTTAGTGGAAATAATTTAATCAGAACTATTTTATTTAGTCAAATATTAGAAGAGTTCGTTCAATATAAATAA 1527 0.3995 MSSWVRGKCIGKGAFGVVNLAYSKSDSKVFAVKSVDTKTALPSQLEALENEIKILKRLSSSSCSSSPHVIGFLGEDVTCEGNKTSSFKNLHLEYMPGGTVAEINRADVDEKLVRNFAWCLVNALRDVHARGVVHCDVKGRNVLIGGSVAKLADFGSAMEFSGGECEVPRGSPMWMAPEVVRREYQGPESDVWSLGCTVIEIFTGKSPWEDRGFETLSRIGFSDELPEFPSGLSELGRDFLEKCLRRDRNRRWRCDQLLQHPFLLPCDRVVETSPRCVLDCEENEFEFEEENEVKLNSDENENSGKNRIGKLATGMRVNWETEDWIEVRAISSEQKEEATMENEEYECDCEGEEAESGVIWEIENIMRVEEEMEVGSNSEYGDSDERVKWEMWKYNRNRRNNVIGGSGSWSGWRCRYRYGWGNFNRNISGIFSICTCCNNCKLFKSCKLFSIYNNCYYSLWLKIFFNWCFKLRFMLNMVKSVFILKFSGNNLIRTILFSQILEEFVQYK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2418 508 Coils Coil 335 355 - -
Mtr5g2418 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Mtr5g2418 508 Gene3D Transferase(Phosphotransferase) domain 1 1 346 - -
Mtr5g2418 508 CDD STKc_MAPKKK 3 263 - -
Mtr5g2418 508 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Mtr5g2418 508 SMART serkin_6 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2418 508 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 359 - -
Mtr5g2418 508 ProSiteProfiles Protein kinase domain profile. 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2418 508 SUPERFAMILY Protein kinase-like (PK-like) 2 274 IPR011009 -
Mtr5g2418 508 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 359 - -
Mtr5g2418 508 Pfam Protein kinase domain 6 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2418 Mtr-Chr5 31716896 31718505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2418 4 340 MAP Kinase Kinase Kinase AT2G30040 58.841 6.42e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr5g2418 Pkinase 4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2418 - - mtr:MTR_5g071560 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2418 5 31716896 31718505 Mtr5g2418 5 31716896 31718505 ECH