Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2417 ATGTCTTGCTCCGTCGCGGTTTCGAATTCGCCGGTGTTTTCACCTTCTTCATCTCTCTTCTGCAACAAATCTGAAACGTTAACGTTATCTCTTTCTCATCTCAAACCATCTTCAACAACAACAACAACGTCTTCATCGTCTTCTTCTTCGCCTTCTCCTTGTTCTTCACCTTCTTCACCTTTTTGTCTTCGGTTACCGAAACTACCCTTGGTTTTTACGTCTAACAAGGATTCTGGGTCGCAGAATGATGCTGTTTTGAAGAGGAAACGACCTACCAGGCTTAATATACCTGTTTCTGAACATGCTTTTTGTGTTCCGGCGACGCCTTCTGCGGTGGCGAGGGATGTTGTTGAGGCGGAGGGAGATGGGTATTCTGTTTATTGTAAGAGAGGGAGGAGGGAGTATATGGAAGATCGTTATACAGCTGGGGTTAATCTTCGTGGTGAAAACAATTTGGCTTTTTTTGGCGTATTTGATGGACATGGAGGTGCCAAAGCCGCTGAATTTGCGGCAAACAACTTAGAAAAGAACATCTTGGACGAAGTTATCATGAGCGACAAAGATGATGTTGAGGAGGCAGTGAAGCGCGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGATCTACATGGTGGTTCTTGTTGTGTGACAGCATTCATTAGGAATGGTAACTTAGTTGTGTCTAATGCTGGTGATTGCCGTGCTGTTATTAGTAGAGGAGGGGTTGCTGAGGCACTAACATCTGATCACCGTCCTTCAAGGGAAGACGAAAAGGACAGAATTGAGACCCTGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTATCAAGAGGAATTGGAGACCGACACTTGAAACAATGGGTGACAGCGGAGCCCGAGACTAAAGTTATTAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTCAATTTTGCGTAGGAAATAACAACCAACAACCATTGATGGCCTGTAAAAAGCTTGCAAAGTTGTCTGTTTCAAGAGGCTCTTTGGATGATACCAGTGTCATGATAATCAAATTGAAACACTATGTTTAG 1137 0.4318 MSCSVAVSNSPVFSPSSSLFCNKSETLTLSLSHLKPSSTTTTTSSSSSSSPSPCSSPSSPFCLRLPKLPLVFTSNKDSGSQNDAVLKRKRPTRLNIPVSEHAFCVPATPSAVARDVVEAEGDGYSVYCKRGRREYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDKDDVEEAVKRGYLNTDSEFMKKDLHGGSCCVTAFIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARQFCVGNNNQQPLMACKKLAKLSVSRGSLDDTSVMIIKLKHYV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2417 378 CDD PP2Cc 123 374 IPR001932 -
Mtr5g2417 378 Gene3D - 114 378 IPR036457 -
Mtr5g2417 378 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 377 - -
Mtr5g2417 378 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Mtr5g2417 378 PANTHER PROTEIN PHOSPHATASE 2C 3 377 IPR015655 GO:0004722|GO:0006470
Mtr5g2417 378 SUPERFAMILY PP2C-like 124 375 IPR036457 -
Mtr5g2417 378 SMART PP2C_4 113 372 IPR001932 -
Mtr5g2417 378 ProSiteProfiles PPM-type phosphatase domain profile. 123 374 IPR001932 -
Mtr5g2417 378 Pfam Protein phosphatase 2C 124 366 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2417 Mtr-Chr5 31701146 31703501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2417 1 376 PP2C-type Phosphatase Gene Family AT1G07160 62.725 9.12e-161 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2417 K17506 - gmx:100797934 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2417 5 31701146 31703501 Mtr5g2417 5 31701146 31703501 ECH
Mtr5g2417 5 31701146 31703501 Mtr3g1716 3 29321574 29323549 ECH
Mtr3g1716 3 29321574 29323549 Mtr5g2417 5 31701146 31703501 PCT