Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2416 ATGGAGACAAAGATTTTGGGGTTGGCTTCATTCCCTTACTACACACCACCAAACCGTTCTCGTCTAAACCTCCTCAGATCATCATTATCTATGCGACACGAATATCCGCTTGCTAGCAAAATCCTTGTTAAAAATCTACCCTATTTTACTGGCGAGAATGCTTTGCAGAAGAAATTTTCAAATTTTGGCAAGATAGCTGAAGTCCAAATGGTTAAAGATGTAAGCACAGAAAGATCAAAGGGACTTGCTTTTATTCAATACACATGTCAAGACGATGCCATGCTTGCACTTGAAACAATGGATCAACAGAGTTTTTATGGTCGTACGATCTCTGTAGAACTTGAGAAACTTGATGTGCATAATTTTGTTGGATCTCCAAAGGCCTCAGGGCCTCCAAAGAAGTGGAATTTGCCAGCAGTGCAAGTAGAAGAGGTAGATTGCTGGTACTGA 450 0.4067 METKILGLASFPYYTPPNRSRLNLLRSSLSMRHEYPLASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLALETMDQQSFYGRTISVELEKLDVHNFVGSPKASGPPKKWNLPAVQVEEVDCWY* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2416 149 SMART rrm1_1 40 113 IPR000504 GO:0003723
Mtr5g2416 149 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Mtr5g2416 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Mtr5g2416 149 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 26 143 - -
Mtr5g2416 149 Gene3D - 27 120 IPR012677 -
Mtr5g2416 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Mtr5g2416 149 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 26 143 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2416 21 114 Eukaryotic Initiation Factors Gene Family AT2G36660 30.612 2.08e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2416 - - gmx:100305971 189.889