Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2409 ATGGAGGTTGATGGTGATAAGAGTGATAATGGAAATCGAAAAAGGAAAAGAAGATTTTTGAAGAGAAAGCTTCTTGTCAATGAAAAAGTTGAGTTGAGAAGTTTGGAAGATGGTTTTCTGGGATCGTGGCATCCGGGGAAAATTCTCCGCTGCGGGAGGAAGACGCGTTATGTCAAATACGACAATATTCTTGATGATGAAGAATCGGATTATCTTATTGAAGTGGTGGATGTTTCTAGTGTTTTGGATGGTGTTAATTCTTCATCTGCTTTAGATTGTAGCTATCAGCGAGGCCTGATTAGACCATTACCGCCTCCAATTGAGTTACTGATAAAGGATCTTCCATTCGGACAATGTGTTGATGTGAAATATCAGGATGCTTGGTGGGAAGGTGTGATATTCGATCGCTGCAATGGAATGAAGGATAGGAGCATATTCTTCCCAGATTTAGGTGATGAAATGAAGGTTGGAGTTAAACAATTGAGGATCACTCAGGATTGGGATGAGTCAACTGAGAATTGGTTACCGAGAGGGAAATGGGTGTTTCTCGAGTTGTTTGAGGAGTGTGAGAGGGTATCCTATGTTGCAGTCTCAGTGAAACAGATTTGGTATGATATTAGGATGAGAAAGGATTTTGCTGAAACCATTAGAGAATGGACTTGTAATGTGAAGGAGTTGTGGAGAGACCTTGTTGTTGAGGTAATTGGTGATTACTATACCCTCACATTAAGCGAAGTTCGCCCTGCCTTAAACATTCCAAACAATTTACTCGAAGGAGAGTCATTTGAACCAACTGATAATGTTCAGTGTGAGGCTACTAATCAAGGTAATGCATTTGGTTCTGACATTGGAATATCTGATAAGCCTGAGGAAAACGCTGACTCCTTAAACTTGTTGGTTACTGATCAAAACTGTGGCAGCACAAGCATCATTCCTTTGGTGGATGAGGAATTTGAGAAGGAAAATCTTTTACATGAAGAGCTTGAATCAGATAAAAGTCAAATGGTGGATGTGGAGTTTGAGAAGGAAATTCTTTTACATGAAGAGCTTGAATCAGATAAAAATCAAATGGTGGATGTGGAATTTGAGAAGGACATTCTTTTACATGAAGAGCTTGAATCAGATAAAAATCGAAAACGGAGACGTTCTAAGTCCATAATTTGGAAGCCATTGGAACTGTCTGAAGTTGAATTCTGTCCTGAAGTTATTGATGAGTATGCACTTGGATGTAGGAGCAAGACGGTTCGGGAGCTTTTGAAGACGAAAGTAAGAAAACATCTTGTTTATCTTGGATGGACAATTGAATGGACCGAAAACAATACTCCTCCACATAGACGATACCGGTACAAGTCTCCGGATAAACTTAATCCAAAGTTTTACACTTCCATTTTTCAAGTTACTAAAATTTTGCAAGAGGATCCTAACATGAACTCTGGGCCACCTCAAATTGACAGCAATCTTTCACATCTGCTCTCTGATCCACCCCAAATGAGTCAAGGTTTCAACGTTTGTCCTCCAACCAATGAACCTTCTCCAGTTAAATTTCAAGTTGAACCAGAATTTTGTCCTCTAGCCATCGTGAAATACTACTGTCACTCATTAGAGAGAAACTCGTCTGATAAGAGAAAGTGGAAATTGAAGGCGAAAAAACATCTGTTATCAGAAGGATGGATGTTTGACTACCCAACTGAAAGAAGGAAGACTACTTTGTACAAGTCTCCACAAGATCAGTGTTTAGGCACACTTCAAGGTGCATGCAGACTATACCTTAAAGAAAAGATTCCCGAATGGACTAATTCTGATCATGGTGATGATGATGATCTACTTTCGAGTGTGTCCCAATTGCTTCAAAAAGAGCCTGAATTACGTACTATAGATGGTTCACCACCAACTGCAAAGAGAAACCATAAACGCGCAAGGACTTCAAAGGCTAGCACACAAAAGGACTTAGAGAGTGAAGTACTTACCCGGGTGCTAAGATCAAGCAAAAGGGTGCAGAAGGTTTTGGGTTCGTCATATCAAAAGCCTCAAAATATTCTGTCTTGGTTAATAGATTGCAACATTGTGTTGCCAAAGTACAAGGTCTTTTACTGGGAAACCGAAGGAGGAAACTCTCCTATGTTTGAAGGGAGGATAACTCGCGAAGGAATTAGGTGCACCTGTTGTCAGAATCTATATGGACTCAGTGGCTTTGCAAACCATGCTGGTGGAAGCAGTAACTGCAGGCCTTCGGCTTGTATATTTTTGAAGGATGGTAGGTCACTGTTAGATTGCATGATGGAAGTAATGCAAGATCACAGGACAAGAGAAATTACGGAGAAACCGCACAATGATCTGTTTGAAGGTGAAAATGACAACATTTGTTCTGTTTGTAACTACGGTGGTGAACTCATTTTATGCGACCAATGCCCCTCGGCGTATCATAAGAATTGTCTTAATTTGGAGGGCATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCGGCCAAAATAAAATTGAAGAGACTGAGGATGGACACTTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTGAGTGCCTCAGAAATGGAGAAAAAGATGATTCAAGACGATGTATGAAAAATTGGTTCTGTGGAGAAGAGTGTGAACGGGTCTATACTGGGCTCCAGAATCTATTAGGAAAGCCAGTTTTAGTGGGGGCAGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGAGACTTGCGGTGTTGGCGGTGCTGAAAGTGACTTAGTGGTGGAGAATTACAGCAAACTGAGTGTTGCACTCTCGGTGATGCATGAATGTTTTGAGCCCCTGCATAACCCTTTCTCTAGCAGAGATATCGTGGAAGATGTTATATTCAACCAAAGGTCTGAGCTCAATCGACTAAACTTCCAGGGTTTCTATACTGTACTTCTAGAGAGAAATGAAGAATTGATTAGTGTGGCGACTGTGAGGATATTTGGAGAGAAGATAGCAGAAGTGCCCCTCGTAGGTACCAGATTTCAGTACAGACGACTTGGAATGTGCCGCGTTTTAATGGATGAGCTCGAAAAGAAGCTAAAGCAACTTGGAGTGGAAAGACTAGTCTTGCCTGCTGTTCCCGGTGTGCTAGACACATGGACGAATTCTTTTGGTTTTGAGCAGATGACGAATTTTGAAAGGTCACAATTTCTGGACTATTCTTTCCTAGACTTTCAAGGAACTGTCATGTGTCAGAAACTTTTGACAAGATTTCCATCTCCGGAATCGGTTGTAACAAGAGACGCGACTCCAAAACAAAAAGATGGTAGCTTCTCTGTTAAATGTAAAATTAATTTTGAAAAGGCTAGTCCAGTATCTGAAGTGGATCAAGCAGAAGGGATTGGCAAAAGAGGAATGATGGATCTACAAGTTTGGAGATCTTCCTAA 3435 0.4087 MEVDGDKSDNGNRKRKRRFLKRKLLVNEKVELRSLEDGFLGSWHPGKILRCGRKTRYVKYDNILDDEESDYLIEVVDVSSVLDGVNSSSALDCSYQRGLIRPLPPPIELLIKDLPFGQCVDVKYQDAWWEGVIFDRCNGMKDRSIFFPDLGDEMKVGVKQLRITQDWDESTENWLPRGKWVFLELFEECERVSYVAVSVKQIWYDIRMRKDFAETIREWTCNVKELWRDLVVEVIGDYYTLTLSEVRPALNIPNNLLEGESFEPTDNVQCEATNQGNAFGSDIGISDKPEENADSLNLLVTDQNCGSTSIIPLVDEEFEKENLLHEELESDKSQMVDVEFEKEILLHEELESDKNQMVDVEFEKDILLHEELESDKNRKRRRSKSIIWKPLELSEVEFCPEVIDEYALGCRSKTVRELLKTKVRKHLVYLGWTIEWTENNTPPHRRYRYKSPDKLNPKFYTSIFQVTKILQEDPNMNSGPPQIDSNLSHLLSDPPQMSQGFNVCPPTNEPSPVKFQVEPEFCPLAIVKYYCHSLERNSSDKRKWKLKAKKHLLSEGWMFDYPTERRKTTLYKSPQDQCLGTLQGACRLYLKEKIPEWTNSDHGDDDDLLSSVSQLLQKEPELRTIDGSPPTAKRNHKRARTSKASTQKDLESEVLTRVLRSSKRVQKVLGSSYQKPQNILSWLIDCNIVLPKYKVFYWETEGGNSPMFEGRITREGIRCTCCQNLYGLSGFANHAGGSSNCRPSACIFLKDGRSLLDCMMEVMQDHRTREITEKPHNDLFEGENDNICSVCNYGGELILCDQCPSAYHKNCLNLEGIPDGDWFCPSCRCGICGQNKIEETEDGHFLTCIQCEHKYHVECLRNGEKDDSRRCMKNWFCGEECERVYTGLQNLLGKPVLVGADNLTWTLVKYVNSETCGVGGAESDLVVENYSKLSVALSVMHECFEPLHNPFSSRDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATVRIFGEKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLDTWTNSFGFEQMTNFERSQFLDYSFLDFQGTVMCQKLLTRFPSPESVVTRDATPKQKDGSFSVKCKINFEKASPVSEVDQAEGIGKRGMMDLQVWRSS* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2409 1144 Pfam Tify domain binding domain 710 761 IPR032308 -
Mtr5g2409 1144 MobiDBLite consensus disorder prediction 620 649 - -
Mtr5g2409 1144 ProSiteProfiles Zinc finger PHD-type profile. 785 830 IPR019787 -
Mtr5g2409 1144 CDD NAT_SF 979 1039 - -
Mtr5g2409 1144 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 923 1084 IPR000182 GO:0016407
Mtr5g2409 1144 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 969 1068 IPR016181 -
Mtr5g2409 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 830 884 IPR013083 -
Mtr5g2409 1144 SMART ring_2 788 827 IPR001841 -
Mtr5g2409 1144 SMART ring_2 829 874 IPR001841 -
Mtr5g2409 1144 CDD PHD2_CHD_II 788 827 - -
Mtr5g2409 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 829 IPR013083 -
Mtr5g2409 1144 Pfam PHD-finger 787 829 IPR019787 -
Mtr5g2409 1144 Pfam Agenet domain 28 105 IPR008395 -
Mtr5g2409 1144 SMART agenet_At_2 112 169 IPR014002 -
Mtr5g2409 1144 SMART agenet_At_2 22 90 IPR014002 -
Mtr5g2409 1144 SMART PHD_3 787 828 IPR001965 -
Mtr5g2409 1144 SMART PHD_3 829 881 IPR001965 -
Mtr5g2409 1144 Gene3D - 939 1071 - -
Mtr5g2409 1144 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 1144 - -
Mtr5g2409 1144 PANTHER PHD ZINC FINGER PROTEIN 1 1144 - -
Mtr5g2409 1144 SUPERFAMILY FYVE/PHD zinc finger 769 828 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2409 Mtr-Chr5 31584181 31590675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2409 17 1032 PHD Transcription Factor Family AT5G58610 36.609 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr5g2409 Agenet 8.9e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2409 - - gmx:102661511 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2409 5 31584181 31590675 Mtr5g2409 5 31584181 31590675 ECH
Mtr3g1712 3 29241153 29248187 Mtr5g2409 5 31584181 31590675 PCT