Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2401 ATGTTAATAATTTTTATTTTTATTTTTCGTTTTGTTTTACCATGGAAACAACATAGGACAGAAATCTTCATGTGCGGTGATTCTAAGAAAAAAACTTGTCAAAAGGATTTGATTATGGGTTGTGAGTTTGTGAATGGGAATAAAGAAGGGCAGTATCATGAGGTTTCTTATTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTCAAAAATGCGATTGAAAACGAGGGTTGTGATGTTGATGGGGTTGGTTTGTGGTATGGAAGGAACGTTGGTTCAAACAAATTTGGTTATGAAGAGAGGACACCTCTCATGGTTGCTGCTATGTATGGAAGTTTGGATGTATCGGCTTATATTCTTGGAACAGGTCGGGTTGATGTTAATCGGTCTAGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCGGTTGTTGGGGGTTCTGCTGCTTCCCCCAAGATTATCAAGATTTTGCTTGATGCATCGGCGGATGCTAGTGCTGTTGATGCCAACGGTAGCCGACCCGTTGATTTGATTGTTTCTCTGGCCAATTCTATCTTCAATCAAAGGAAGAGGATGCTACAAGCTCTTTTGGAGGGGACAGGCGGTGCTGATCAGACACATCTTTTGTTTCCAGAGACAATTGATGACATTGACGAATATCAAAGGCAAGATGTAAACACACCTCGTGTTTCAAAAGATTATGCTGTTGATGTCTCTCTTCCAGACATTAAGAATGGGATATATAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAGGAAATATCATTATAGCTGCGTCCCTTGTCCTGAGTTTCGGAAAGGATCTTGCAGTAAAGGAGATTCTTGTGACTATGCACACGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATAAGACACGGCTTTGCAAGGATGAGAGTTTGTGCATGAGAAGAGTTTGCTTCTTTGCTCACAAGGTCGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCTAGGTCATATTACAGTACTGCTTCTACATTAGAGATGGGTTCAATTAGCCCAATGTCACTTGGTTCTCCATCTGTTTTGATACCACCCTCCTCAACGCCGCCTTTGACTTCATCTGGAGCGTCGTCTCCCGTTGCTGCTACAGCCATGTGGCAGACACCGTCTAATGTTTCGATCCCTACCCTTCAGCTTCCCAAAAGCAGGTTGAAGACTGGAATGACCGCTAGAGATATTAATTCAGATATTGCAATGCTTAGGGTTGAAACTCAGCGGCGAAAGCAGCAACTACTGATGGATGAGATGTCCGGTCTTTCCTCTCCTTCCAACTGGAATCATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTCGACCAACCATACCACCGGGGAACTAAATAGGTTTTCGGGGGTGAATCCTACAAACCTTGAAGACTTTTTCGGGTCTCTTGATCCGTCAATGTTGCATAAATTCCACGGAATTTCACTTGATTCTGCAGGATCTCAGTTACAATCTCCGACTGGAATCCAAATGCGTCCGAATATGAACCAGCATCTGCAACAAAACTATTCTTCAGGCCATTCCACTTCCAGTGTGATTGGATCTCCGACTTATAGGTTTCAGCCATCCGGGGAGTTATCCGCATCGGCTTTGAATGCAAGAGCTGCTGCATTTTCAAAGCGGAGCCAGAGCTTTATCGAGCGCGGTGTCACAAACCGTCATTCTGAGCTTCATTCTCCTGCTAAGCCTTATGCTTTTTCTAACTGGGGCTCACCCGATGGAAATTTAGATTGGACTTCACACGGAGAAGAACTGAATAAGCTGAGGAAATCATCTTCATTTGCATTTCGAACCACCAGTACTCCTTTAACTCCAGCTGCAGCTAGGGCACAGGAAAATGACTATGAACCAGATGTGTCTTGGGTTAATACACTTGTAAAGGATGCTACGCCGCAAGAATCTCATCAGTTTAGTGTTGAAGATCAGAAAAGGAAACTGCAGCGCCATCTTAACAATGGAACAGATTCGATTCCGGCTTGGTTGGAGCAATTGTACATGGATCAGGAGCAAATAGTGCAGTGA 2184 0.44 MLIIFIFIFRFVLPWKQHRTEIFMCGDSKKKTCQKDLIMGCEFVNGNKEGQYHEVSYLLEFSAADDVIGFKNAIENEGCDVDGVGLWYGRNVGSNKFGYEERTPLMVAAMYGSLDVSAYILGTGRVDVNRSSGSDGATALHCAVVGGSAASPKIIKILLDASADASAVDANGSRPVDLIVSLANSIFNQRKRMLQALLEGTGGADQTHLLFPETIDDIDEYQRQDVNTPRVSKDYAVDVSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYKTRLCKDESLCMRRVCFFAHKVEELRPLYASTGSAIPSPRSYYSTASTLEMGSISPMSLGSPSVLIPPSSTPPLTSSGASSPVAATAMWQTPSNVSIPTLQLPKSRLKTGMTARDINSDIAMLRVETQRRKQQLLMDEMSGLSSPSNWNHSMPNSPSFPVSSTNHTTGELNRFSGVNPTNLEDFFGSLDPSMLHKFHGISLDSAGSQLQSPTGIQMRPNMNQHLQQNYSSGHSTSSVIGSPTYRFQPSGELSASALNARAAAFSKRSQSFIERGVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFAFRTTSTPLTPAAARAQENDYEPDVSWVNTLVKDATPQESHQFSVEDQKRKLQRHLNNGTDSIPAWLEQLYMDQEQIVQ* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2401 727 SUPERFAMILY Ankyrin repeat 80 181 IPR036770 -
Mtr5g2401 727 ProSiteProfiles Zinc finger C3H1-type profile. 298 320 IPR000571 GO:0046872
Mtr5g2401 727 ProSiteProfiles Ankyrin repeat region circular profile. 135 169 - -
Mtr5g2401 727 ProSiteProfiles Ankyrin repeat profile. 135 170 IPR002110 GO:0005515
Mtr5g2401 727 SMART c3hfinal6 328 351 IPR000571 GO:0046872
Mtr5g2401 727 SMART c3hfinal6 293 319 IPR000571 GO:0046872
Mtr5g2401 727 Gene3D - 140 200 IPR036770 -
Mtr5g2401 727 PANTHER UNKEMPT FAMILY MEMBER 45 725 IPR045234 -
Mtr5g2401 727 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 45 725 - -
Mtr5g2401 727 Gene3D - 293 356 - -
Mtr5g2401 727 Gene3D - 47 139 IPR036770 -
Mtr5g2401 727 Pfam Ankyrin repeats (3 copies) 91 166 IPR002110 GO:0005515
Mtr5g2401 727 SMART ANK_2a 135 167 IPR002110 GO:0005515
Mtr5g2401 727 SMART ANK_2a 100 130 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2401 Mtr-Chr5 31433896 31437041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2401 24 722 C2H2 Transcription Factor Family AT5G12850 37.859 2.45e-138 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr5g2401 Ank_2 4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2401 - - aprc:113846970 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2401 5 31433896 31437041 Mtr5g2401 5 31433896 31437041 ECH
Mtr5g2401 5 31433896 31437041 Mtr3g1696 3 29054530 29055603 ECH