Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2397 ATGGCCGACGCTTTGCTTGGAGTTGTGTTTGAAAATTTGACGGCTCTCCTTCAAAATGAATTTTCAACCATTTCTGGAATTAAGTCAAAGGTTCAAAAGCTATCAAACAACTTAGTTCACATCAAGGCTGTTCTTGAAGATGCTGAGAAGAAACAATTCAAAGAACTCTCTATTAAGCTATGGTTACAAGACCTCAAAGATGGTGTTTATGTGCTCGATGATATCCTTGATGAGTACTCGATCAAGTCTTGTCGACTGAGAGGATTTACCTCTTTCAAACCAAAGAACATCATGTTTCGCCATGAGATTGGTAACAGGTTCAAAGAGATTACAAGGAGGTTAGATGATATTGCTGAAAGTAAGAACAAGTTTTCTCTACAGATGGGTGGCACTCTTAGGGAAATCCCAGATCAAGTAGCTGAAGGGCGCCAAACCGGCTCCATTATTGCTGAACCAAAAGTGTTTGGACGAGAAGTTGATAAAGAAAAGATTGTTGAGTTTCTTCTCACCCAAGCAAGGGACTCTGACTTCCTTTCCGTCTATCCCATAGTTGGTTTAGGTGGTGTTGGAAAAACAACTCTTGTTCAATTGGTCTACAATGATGTTAGGGTGAGTGGCAATTTTGAAAAAAAAATTTGGGTTTGTGTTTCTGAGACTTTCTCGGTAAAGAGGATTTTGTGTTCTATTATAGAATCTATCACATTACAGAAGTGTCCTGACTTTGATTATGCTGTAATGGAAAGAGAGGTGCAAGGATTGTTGCAAGGGAAAAGATATTTGCTGGTTTTGGATGATGTGTGGAATCAAAATCAACAATTGGAATCAGGGTTAACACGAGAGAAATGGAACAAATTGAAACCTGTGTTGTCTTGTGGATCCAAAGGTAGTTCCATTTTAGTGTCCACCCGTGATGAAGTTGTTGCAACGATCACAGGAACATACCAAACTCATCATCGTTTGTCTTCTCTCTCTGATAGTGAATGTTGGTTGTTGTTCGAACAATATGCATTTGGACATCACAAAGAAGAGCGTGCTGATCTCGTGGCAATAGGAAAGGAGATAGTAAAGAAATGCAATGGATTGCCTCTTGCAGCAAAATCATTGGGAAGTTTAATGAACTCAAGGAAAGATGAAAAGGAATGGCTTAAAATTAAAGACAGTGAACTTTGGGATTTATCAGATGAAAATTCCATTTTGCCTGCTTTGAGGTTGAGTTACTTTTATTTACCGGCAGCCCTAAAACAATGTTTCTCTTTTTGTGCTATATTTCCCAAAGATGCAGAAATCCTAAAGGAAGAATTGATTTGGCTTTGGATGGCTAATGGATTGATTTCATCTAGGGGTACTACGGAGGTTGAAGATGTTGGCATCATGGTGTGGGATGAATTGTACCAAAAATCATTCTTTCAAGATAGAAAAATGGATGAATTTTCTGGCGACATTTCATTCAAGATGCATGACCTTGTCCATGATCTTGCTCAATCAGTAATGGGGCAAGAATGTATGTATTTGGAGAATGCAAACTTGACTAGTTTGTCAAAAAGCACACACCACATTAGTTTTGACAATAAAGACTCGTTATCCTTCGACAAGGATGCTTTCAAAATAGTTGAATCCTTGCGAACATGGTTTGAGTTTTGTAGTACTTTTTCAAAAGAAAAACATGATTACTTCCCAACAAACCTTTCTCTTCGGGTTTTATGCATAACCTTTATCCGAGAGCCATTACTAGGTAGTTTAATTCATTTAAGGTATTTGGAACTTCGTTCTCTTGATATAAAAAAGTTGCCTGACTCAATTTACAACTTACAAAAACTGGAAATCTTGAAAATAAAAGACTGTCGTAAACTGAGTTGTCTCCCAAAACGCTTGGCTTGCTTACAAAATCTTAGACATATAGTCATTGAAGTATGTCGGTCTTTGTCTCTCATGTTTCCTAACATTGGAAAATTAACTTGTCTAAGAACATTAAGTGTGTACATTGTTAGTTTAGAGAAAGGGAATAGCTTGACAGAGTTACGTGATCTAAACCTCGGTGGAAAACTGCATATCCAAGGATTAAACAATGTTGGCAGGTTATTTGAAGCTGAAGCGGCTAATTTGATGGGTAAAAAAGACCTTCATGAATTATACTTGTCATGGAAAGACAAACAAGGAATTCCAAAGAACCCTGTTGTTAGTGTTGAGCAAGTACTTGAAGTTCTTCAACCTCACTCAAATCTCAACTGCTTGAAAATAAGTTTCTATGAGGGATTATCCTTGCCAAGTTGGATAATTATTCTTAGTAATTTAGTTTCTCTTAAACTTAAGCGTTGTAAGAAAGTTGTGCGGCTTCAGTTACTTGGTATACTACCATCTTTAAAAAACCTGGAATTATCTTATATGGATAATCTGAAATACTTGGATGATGATGAATCTGAGGATGGTATGGAGGTGAGGGTTTTCCCATCTCTGGAGGAACTCGTATTATATCAGTTACCAAACATAGAGGGTTTATTGAAAGTGGAAAGAGGGGAGATGTTTCCTTGTCTTTCTAAGTTGGATATCTCTGAATGCCGTAAACTTGGACTGCCATGTCTTCCATCTCTTAAATCCCTCACTGTATCGGAATGTAACAATGAGTTACTGAGGTCAATCTCTACCTTCCGTGGTCTTACTCAGCTTTTCGTAAATGGGGGTGAAGGAATAACATCCTTCCCAGAGGGGATGTTCAAAAACCTTACTTCTCTTCAATCTCTGAGAATATATAATTTCCCAAAACTGAAGGAGTTACCAAATGAAACCTTTAACCCAGCTTTGACGCTTCTGTGTATCTGTTATTGTAATGAGTTGGAGTCCTTACCAGAGCAAAATTGGGAAGGTCTTCAATCCCTTCGAACTCTACATATTTATAGCTGTGAAGGATTGCGATGTTTGCCGGAGGGTATTCGACACCTCACTTCTCTTGAGCTTCTGACTATCATTGGTTGCCGAACATTAAAGGAACGATGCAAGAAGCGAACAGGGGAGGATTGGGACAAGATATCTCATATTCCAAAAATACAGTTTTAA 3051 0.3799 MADALLGVVFENLTALLQNEFSTISGIKSKVQKLSNNLVHIKAVLEDAEKKQFKELSIKLWLQDLKDGVYVLDDILDEYSIKSCRLRGFTSFKPKNIMFRHEIGNRFKEITRRLDDIAESKNKFSLQMGGTLREIPDQVAEGRQTGSIIAEPKVFGREVDKEKIVEFLLTQARDSDFLSVYPIVGLGGVGKTTLVQLVYNDVRVSGNFEKKIWVCVSETFSVKRILCSIIESITLQKCPDFDYAVMEREVQGLLQGKRYLLVLDDVWNQNQQLESGLTREKWNKLKPVLSCGSKGSSILVSTRDEVVATITGTYQTHHRLSSLSDSECWLLFEQYAFGHHKEERADLVAIGKEIVKKCNGLPLAAKSLGSLMNSRKDEKEWLKIKDSELWDLSDENSILPALRLSYFYLPAALKQCFSFCAIFPKDAEILKEELIWLWMANGLISSRGTTEVEDVGIMVWDELYQKSFFQDRKMDEFSGDISFKMHDLVHDLAQSVMGQECMYLENANLTSLSKSTHHISFDNKDSLSFDKDAFKIVESLRTWFEFCSTFSKEKHDYFPTNLSLRVLCITFIREPLLGSLIHLRYLELRSLDIKKLPDSIYNLQKLEILKIKDCRKLSCLPKRLACLQNLRHIVIEVCRSLSLMFPNIGKLTCLRTLSVYIVSLEKGNSLTELRDLNLGGKLHIQGLNNVGRLFEAEAANLMGKKDLHELYLSWKDKQGIPKNPVVSVEQVLEVLQPHSNLNCLKISFYEGLSLPSWIIILSNLVSLKLKRCKKVVRLQLLGILPSLKNLELSYMDNLKYLDDDESEDGMEVRVFPSLEELVLYQLPNIEGLLKVERGEMFPCLSKLDISECRKLGLPCLPSLKSLTVSECNNELLRSISTFRGLTQLFVNGGEGITSFPEGMFKNLTSLQSLRIYNFPKLKELPNETFNPALTLLCICYCNELESLPEQNWEGLQSLRTLHIYSCEGLRCLPEGIRHLTSLELLTIIGCRTLKERCKKRTGEDWDKISHIPKIQF* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2397 1016 CDD RX-CC_like 2 119 IPR038005 -
Mtr5g2397 1016 Pfam Rx N-terminal domain 6 100 IPR041118 -
Mtr5g2397 1016 PRINTS Disease resistance protein signature 180 195 - -
Mtr5g2397 1016 PRINTS Disease resistance protein signature 253 267 - -
Mtr5g2397 1016 PRINTS Disease resistance protein signature 358 372 - -
Mtr5g2397 1016 PRINTS Disease resistance protein signature 601 617 - -
Mtr5g2397 1016 Gene3D - 322 404 IPR042197 -
Mtr5g2397 1016 Pfam NB-ARC domain 158 386 IPR002182 GO:0043531
Mtr5g2397 1016 Gene3D - 405 493 IPR036388 -
Mtr5g2397 1016 Gene3D Ribonuclease Inhibitor 494 668 IPR032675 -
Mtr5g2397 1016 SUPERFAMILY L domain-like 484 858 - -
Mtr5g2397 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 420 IPR027417 -
Mtr5g2397 1016 Gene3D - 137 315 IPR027417 -
Mtr5g2397 1016 Coils Coil 31 51 - -
Mtr5g2397 1016 PANTHER OS05G0414200 PROTEIN 28 924 - -
Mtr5g2397 1016 Gene3D Ribonuclease Inhibitor 669 857 IPR032675 -
Mtr5g2397 1016 Gene3D Ribonuclease Inhibitor 858 1002 IPR032675 -
Mtr5g2397 1016 SUPERFAMILY L domain-like 812 993 - -
Mtr5g2397 1016 Gene3D - 6 118 - -
Mtr5g2397 1016 PANTHER DISEASE RESISTANCE PROTEIN RP 28 924 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2397 Mtr-Chr5 31368467 31375267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2397 183 659 WRKY Transcription Factor Family AT5G45050 23.495 7.21e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2397 - - mtr:MTR_5g072140 1467.6