Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2381 ATGTCGCACTTCGGAAGACAAGGTCCTCCAGACATCGCTGACACCTACTCTCTCCTCGTTCTCAACATCACTTTCCGTACAACCGCTGATGATCTATTTCCTCTGTTCGACAAATACGGAAAAGTTGTTGACATTTTCATCCCCAGAGATCGAAGGACCGGTGAATCGAGGGGATTCGCTTTTGTACGTTATAAGTATGCTGATGAAGCTTCAAAGGCCGTTGATAGGCTTGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAGTATGGCCCTAATGCTGAGAGAATTCACAAAGGAAGGATTATTGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCACGATGATTACAGAGACAAGGGTTACAGGAGGAGAAGTCGCAGTAGAAGTTATGATAGGTATGAACGTGACAGGTACCGTGGTGGGAGAGACAGGGACTACCGTCGCCGAAGCCGAAGCCGTAGTGCCAGTCCTGATTACAAGCGCCGTGGAAGAGGGCGCTATGATGATGAGCGTCGTAGTAGAAGCAGAAGCAGATCAGTAGACAGCCGCTCCCCTGCAAGACGCAGTCCTAGTCCAAAAAGGAGCCCTTCTCCTAAGAAGAGTATTTCTCCTAAGAAAAGTCCTAGTCCTAGTCCACGTCGTGAGAGTCCTGATACTCGTAGCCGTGATGGAAGGTCTCCTACTTCTCGCAGTGTCTCACCACGAGGCCGTCCTGAAGCCTCCCAAAGCCCTTCTCCTCGAAATTCAGACGGTGATGAATGA 804 0.4963 MSHFGRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHHDDYRDKGYRRRSRSRSYDRYERDRYRGGRDRDYRRRSRSRSASPDYKRRGRGRYDDERRSRSRSRSVDSRSPARRSPSPKRSPSPKKSISPKKSPSPSPRRESPDTRSRDGRSPTSRSVSPRGRPEASQSPSPRNSDGDE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2381 267 SMART rrm1_1 17 90 IPR000504 GO:0003723
Mtr5g2381 267 MobiDBLite consensus disorder prediction 122 197 - -
Mtr5g2381 267 MobiDBLite consensus disorder prediction 198 223 - -
Mtr5g2381 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Mtr5g2381 267 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 267 - -
Mtr5g2381 267 Gene3D - 4 104 IPR012677 -
Mtr5g2381 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Mtr5g2381 267 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Mtr5g2381 267 MobiDBLite consensus disorder prediction 225 239 - -
Mtr5g2381 267 MobiDBLite consensus disorder prediction 100 267 - -
Mtr5g2381 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 267 - -
Mtr5g2381 267 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2381 Mtr-Chr5 31158246 31162486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2381 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.14e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2381 K12891 - gmx:100778928 270.011