Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2380 ATGCAGCCAAGCCGGCGAAAGTGTGTCCGGATATCATCGCCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATTCCAAACAAATAAGAATTCCAGATGAATTTATAACAAGATTTGGAAATGAACTCAATAATGTTGCTACAATTACTGTTCCAGATGGTCGTGTATGGAAAATGGAACTGAAGAAACGTGGCGAGAATGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTAGAATATTATTCTATAGGATATGGTTGCTTCATTTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTCCTATCCTTTCGAAACTCCAAGTACTAATGGAGAACCAAAAACAAATTATCCTAGTTCTAGAAAAAGGTCCAAGGTTGAAACATGTGAGAGGCTTCGGAAAAAGGTCAAAAACATGTCTAAATATGCTTCTAAAAGAGTAGAGGATGCCGCCAAAGAACTCAACCCAAACAACCCTTATTTTCGTTCCAAAATCGTTAAGGGAAAATATGCGTATGTTAATTTTGATTTTGCTACAAAGTATCTAAAGCCAAATATTCCTATAAAGCTCCAAAATTCTCATGGAGAGCAGTGGGAAGTGTTTGGCATCTTTCACGATGCCAGATCATCAGCAATACAAATAACGAGGGGATTTTCTATATTTCAAAAGGACAACAACCTGTCGTATGGAGATTATTGTGTGTTTGAGCTGATCAAGACAAAACCGGTTGTGCTAAAAGTCACAATGTTTCGTGCTATTGACTATTGCGATTAA 825 0.3636 MQPSRRKCVRISSPEKESKHFMKAILPSPIHSKQIRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPKTNYPSSRKRSKVETCERLRKKVKNMSKYASKRVEDAAKELNPNNPYFRSKIVKGKYAYVNFDFATKYLKPNIPIKLQNSHGEQWEVFGIFHDARSSAIQITRGFSIFQKDNNLSYGDYCVFELIKTKPVVLKVTMFRAIDYCD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2380 274 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Mtr5g2380 274 Pfam B3 DNA binding domain 193 269 IPR003340 GO:0003677
Mtr5g2380 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 144 269 - -
Mtr5g2380 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 15 143 - -
Mtr5g2380 274 SMART B3_2 21 113 IPR003340 GO:0003677
Mtr5g2380 274 SMART B3_2 178 270 IPR003340 GO:0003677
Mtr5g2380 274 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
Mtr5g2380 274 PANTHER B3 DOMAIN-CONTAINING 15 143 - -
Mtr5g2380 274 PANTHER B3 DOMAIN-CONTAINING 144 269 - -
Mtr5g2380 274 CDD B3_DNA 19 111 IPR003340 GO:0003677
Mtr5g2380 274 Gene3D - 12 114 IPR015300 -
Mtr5g2380 274 Gene3D - 156 273 IPR015300 -
Mtr5g2380 274 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
Mtr5g2380 274 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Mtr5g2380 274 CDD B3_DNA 169 268 IPR003340 GO:0003677
Mtr5g2380 274 ProSiteProfiles B3 DNA-binding domain profile. 205 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2380 Mtr-Chr5 31153750 31155905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2380 130 274 B3 DNA Binding Superfamily AT3G18990 34.437 4.77e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr5g2380 B3 8.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2380 - - mtr:MTR_5g070440 565.844