Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2363 ATGGTAAGAGGAGGAAATCATGGAGTTAATGGCGTTAAAATCTTTGGCAATGAAAATATAAATGTCAATGACCCTTTGATGGATAGATTCTTATTGGGCCAAATGATTCACTACCCTAACCATCAACAAAACAATGCAAGTATGTTCCCTTACTCTTATGGTTCCAACCATGAGTTTATGTGGCCAAATTATACTCAACAATCAAGCTTTGTTGTTGATGGGGTCTTAGCAAATGAAGAGGCTTTGAAGTGGACTAACTTCAACCAAACCCCCACATTGTGCCTTAAAGACCTTCAAGGTTATGGTGAAAACACCAACATTGTGGGAAGAAAAACTAAGAAAGAGACTTCTGAGATCTTGATCAAAGGACAATGGACAAACGAAGAAGACAGGAAACTGATAAAGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAACAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAAAATATTAGTAGCTACACATGCCAAAATTGGAAACCGTTGGGCTGAGATAGCAAAGAAGATTCCAGGAAGAACTGAAAATGCCATAAAAAATCATTGGAATGCCACAAAAAGAAGACAAAATTCAAGAAGAAAGAACAAGAAGAATGAAACTAATTTCAAGGGATCAAAACCTAAGTCCTACATACTTGAAAACTATATCAAAACCAACACCTTCATCACTACAAAAATTACCAACATACCCTCTTCCTCTCATAATGTTGTTGATGATGTGAATGAGAGTGAGCTTGTTCATTCAATCCAATACCCTAATTACAACATGCACTTGGATACTCCTACCTCTATGAATAATTTCCTTCCTCATGATCTTTACCTCTCTCAATTGTTGAATATGTAG 942 0.3694 MVRGGNHGVNGVKIFGNENINVNDPLMDRFLLGQMIHYPNHQQNNASMFPYSYGSNHEFMWPNYTQQSSFVVDGVLANEEALKWTNFNQTPTLCLKDLQGYGENTNIVGRKTKKETSEILIKGQWTNEEDRKLIKLVKQYGERKWAQIAEKLEGRVGKQCRERWHNHLRPDIKKDSWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETNFKGSKPKSYILENYIKTNTFITTKITNIPSSSHNVVDDVNESELVHSIQYPNYNMHLDTPTSMNNFLPHDLYLSQLLNM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2363 313 CDD SANT 125 168 IPR001005 -
Mtr5g2363 313 MobiDBLite consensus disorder prediction 217 238 - -
Mtr5g2363 313 Pfam Myb-like DNA-binding domain 125 183 - -
Mtr5g2363 313 SUPERFAMILY Homeodomain-like 121 215 IPR009057 -
Mtr5g2363 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 172 IPR017930 -
Mtr5g2363 313 Gene3D - 175 243 - -
Mtr5g2363 313 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Mtr5g2363 313 ProSiteProfiles Myb-like domain profile. 122 168 IPR001005 -
Mtr5g2363 313 CDD SANT 176 219 IPR001005 -
Mtr5g2363 313 Gene3D - 121 173 - -
Mtr5g2363 313 PANTHER MYB TRANSCRIPTION FACTOR 267 312 - -
Mtr5g2363 313 PANTHER MYB TRANSCRIPTION FACTOR 3 268 - -
Mtr5g2363 313 PANTHER MYB PROTEIN-RELATED 267 312 - -
Mtr5g2363 313 PANTHER MYB PROTEIN-RELATED 3 268 - -
Mtr5g2363 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 223 IPR017930 -
Mtr5g2363 313 SMART sant 173 221 IPR001005 -
Mtr5g2363 313 SMART sant 121 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2363 Mtr-Chr5 30987132 30989285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2363 112 251 MYB Transcription Factor Family AT5G58850 69.863 6.50e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2363 Myb_DNA-bind_6 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2363 K09422 - aprc:113874412 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2363 5 30987132 30989285 Mtr5g2363 5 30987132 30989285 ECH