Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2351 ATGAAGTGGGAAATGGAAGTTCTACCTCCTGCATCATACACACAAAACTCCAATTGGTGTATGGAAGATAACATGGCCACAAACTGGACTCCAGAAGAGAACAAACTATTTGAAAATGCTCTTGCAGTTCATGATAAAGATACGCCGGATCGATGGCATAAAGTAGCTGAAATGATACCAGGAAAGACGGTCGGTGATGTGATGAGACAATATAAGGAATTAGAAGATGATGTTTGTAATATAGAAGCTGGGTTGATTCCAGTTCCTGGTTATAACACTCCTACTTTACCCTTTACCTTAGATTGGGTGAACAGTTCAGGTTATGATGAATTCAGAGGAAGTGGAAAGAGATCTTCTTTAGTTAGAGCTCCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAACACAAATTATTTCTACTAGGCCTAAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACGAGAACACCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGAAAAGACAAGAGGAGAGCAAGCATACATGACATAACAACAGTTAATCTTTCAGAAAAAATTGGAACTTGTTCTTCAGAAGACACCAGTAATAGATCCACTTCACCACAAAATTCTATCTTACTTTCACACCAGCAGCAGCAACAACAAACTTCGACTGCGACAAATTTTCGTTGGAGGAATAATCAACAAAATGCTATGGCTTTCAATCCAACTCATGAACAAGTTTTCATGGATCCTCATGGTTTTAACTCCTATGAGGTTAAAATGCAAGACCAAAATCTTCATAAAGGTCTTGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATTCATCACAACATTATTCACATGCATAA 924 0.3853 MKWEMEVLPPASYTQNSNWCMEDNMATNWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVGDVMRQYKELEDDVCNIEAGLIPVPGYNTPTLPFTLDWVNSSGYDEFRGSGKRSSLVRAPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSEKIGTCSSEDTSNRSTSPQNSILLSHQQQQQQTSTATNFRWRNNQQNAMAFNPTHEQVFMDPHGFNSYEVKMQDQNLHKGLVHESSYPHNMVFQMQHSSQHYSHA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2351 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Mtr5g2351 307 CDD SANT 133 178 IPR001005 -
Mtr5g2351 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR043363 -
Mtr5g2351 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Mtr5g2351 307 SUPERFAMILY Homeodomain-like 127 181 IPR009057 -
Mtr5g2351 307 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Mtr5g2351 307 SMART sant 130 180 IPR001005 -
Mtr5g2351 307 SMART sant 25 77 IPR001005 -
Mtr5g2351 307 CDD SANT 28 74 IPR001005 -
Mtr5g2351 307 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Mtr5g2351 307 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Mtr5g2351 307 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Mtr5g2351 307 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Mtr5g2351 307 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Mtr5g2351 307 Gene3D - 132 182 - -
Mtr5g2351 307 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 283 - -
Mtr5g2351 307 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Mtr5g2351 307 Gene3D - 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2351 Mtr-Chr5 30879598 30882345 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2351 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2351 - - gmx:778181 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2351 5 30879598 30882345 Mtr5g2351 5 30879598 30882345 ECH
Mtr5g2351 5 30879598 30882345 Mtr5g2785 5 36287442 36289937 ECH
Mtr5g2351 5 30879598 30882345 Mtr3g1632 3 28324567 28327372 ECH
Mtr7g1601 7 31330233 31333032 Mtr5g2351 5 30879598 30882345 ECH
Mtr1g1968 1 29292898 29296711 Mtr5g2351 5 30879598 30882345 ECH