Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2342 ATGGGTTCTTTATGTGATTTTTGCGGAGACCAGAGGTCTTTGGTGTACTGCCGCTCTGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAACGAACTTTCTAAGCGTCATTCAAGAACACTTGTATGCGAGAGGTGTAATTTACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTCAGCTCATGGTACCAATCCATCTTCTTCAACACACAAGAGGCAATCAATCAATTGCTTCTCTGGCTGTCCTTCAGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCCCTTCTACGGGTGAAGCATGTGAACATAAACTCGGTTTGATGAGCATTAATGAGAACAGTGACAACAGTGCTAGGGTTCCTCCAGAAAGCAAGAATGTGTCTGGTTCAGCTCAAGTGGCCGACCTTCCAAGCAAAAACAAATCTGGCGTCGACACATCTTCAATACCCGAGTCAAGTGCCAAACCCCGTATTTTGGACCAGGCGCCCGGATCTTCCAATGAATTTATGCCTAAGTTACTATGTCCCAGTAGAAAGGCTCCAGCACTATGTGAAGATGATAAGTTGCTTGATGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATTCGGAACTTTTTGATTTTGCTCTCAACCACTCTGAAGAGTTTTTTGAAAATGGTGGTATCAATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGTGCTTTTGCTGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCGGTTATTTATTTTACGGAAAGACAATCAAACCTTTCATTTTCTGGCGTTAACAAAGATGCTAGTGCTGGTGACTATCAAGAGTGTGGTACTTCTTCAATGCTTCTCACAGGGGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAATTCTATTCAATCTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCAAGGGCTGATGTCAGAAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATACGACTATGACCCTTTGAGTCAAACTAGAAGCTGCTGA 1233 0.4274 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNLQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSDIPSTGEACEHKLGLMSINENSDNSARVPPESKNVSGSAQVADLPSKNKSGVDTSSIPESSAKPRILDQAPGSSNEFMPKLLCPSRKAPALCEDDKLLDDFNIDEMDFELENYSELFDFALNHSEEFFENGGINSLFERKDMSASAGDSNCQGAFAAEGSSARFVSAIQPECSNAASADSILSTKTEPVIYFTERQSNLSFSGVNKDASAGDYQECGTSSMLLTGEPPWCPPCPENSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETYDYDPLSQTRSC* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2342 410 CDD Bbox1_BBX-like 4 47 - -
Mtr5g2342 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Mtr5g2342 410 MobiDBLite consensus disorder prediction 130 172 - -
Mtr5g2342 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Mtr5g2342 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Mtr5g2342 410 MobiDBLite consensus disorder prediction 130 183 - -
Mtr5g2342 410 CDD Bbox1_BBX-like 47 90 - -
Mtr5g2342 410 SMART bboxneu5 1 47 IPR000315 GO:0008270
Mtr5g2342 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Mtr5g2342 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 409 - -
Mtr5g2342 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 409 - -
Mtr5g2342 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2342 Mtr-Chr5 30773663 30778997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2342 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 52.594 4.58e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr5g2342 CCT 5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2342 - - gmx:100783016 649.818