Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2336 ATGGGAGAGGGAGAGAGAATGGTGGAACCAGAAACAACATCATCATCAACAATAACATTAACAACAACAACAACAACAACATGGAAACAAAACCAAACACTCCAAACATTATCAGAAAAACTAACAAACGGAAACCTTAACACAAAAATCGAAGCTGCAAGAGAAATTCGAAGAATGGTTCGAAAATCATCGAAGACACGCTCCAAACTTGCTGATTCTGGTGTTATTCAACCACTCATCTTCATGCTCTCTTCTTCCAATATTGAGGCTCGTGAATCCTCTCTTCTCGCTCTTCTCAACCTGGCTGTTCGCAACGAACGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTAGAGCTCCTCAAGATGCAATCTAACGGTATACGAGAATTGGCTACAGCTGCAATCTTGACACTCTCATCTGCTGCACCCAACAAGCCCATTATTGCTGCTTCCGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATACTGTTACAACCCTCCACAATCTCTCCTATAGCACCGTGAATCCCATTGAACTTCTTGATGCCAGCGCTGTTTCCCCTCTTATCAACCTCCTTAAAGACTGTAAGAAGTATTCAAATTTTGCAGAAAAAGCTACATCGCTCCTTGAAATCCTTTCCAACTCTGAAGAGGGACGAATTGCGATCTCACTTACAGAAGGTGGAATTTTAACACTAGTAGAGACAGTTGAAGATGGATCGCTTGTCAGCACAGAATATGCTGTTGGAGCATTGCTATCGTTATGTCTGAGCTGCCGGGATAAGTATCGGGAACTGATTCTTAAAGAAGGAGCAATTCCGGGCCTGTTACGGCTGACAGTAGAGGGCACAGTTGAAGCTCAAGATAGAGCTCGCATGCTTCTGGATTTACTCAGAGATTCTCCTAAAGAAAAAAGACTAGACTCCTCAGTTTTGGAGAAAATTGTTTACGACATGGCTGAAAGGCTAGATAGAGTATCGGTAGATAAAGCTGCGGAAACATCCAAATGA 1053 0.433 MGEGERMVEPETTSSSTITLTTTTTTTWKQNQTLQTLSEKLTNGNLNTKIEAAREIRRMVRKSSKTRSKLADSGVIQPLIFMLSSSNIEARESSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKMQSNGIRELATAAILTLSSAAPNKPIIAASGAAPLLVQILKSGSVQGKVDTVTTLHNLSYSTVNPIELLDASAVSPLINLLKDCKKYSNFAEKATSLLEILSNSEEGRIAISLTEGGILTLVETVEDGSLVSTEYAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTVEAQDRARMLLDLLRDSPKEKRLDSSVLEKIVYDMAERLDRVSVDKAAETSK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2336 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Mtr5g2336 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 242 IPR000225 GO:0005515
Mtr5g2336 350 PANTHER U BOX DOMAIN-CONTAINING 19 339 - -
Mtr5g2336 350 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Mtr5g2336 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Mtr5g2336 350 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 339 - -
Mtr5g2336 350 Gene3D - 18 347 IPR011989 -
Mtr5g2336 350 SUPERFAMILY ARM repeat 29 318 IPR016024 -
Mtr5g2336 350 SMART arm_5 63 103 IPR000225 GO:0005515
Mtr5g2336 350 SMART arm_5 230 271 IPR000225 GO:0005515
Mtr5g2336 350 SMART arm_5 104 145 IPR000225 GO:0005515
Mtr5g2336 350 SMART arm_5 187 229 IPR000225 GO:0005515
Mtr5g2336 350 SMART arm_5 146 186 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2336 Mtr-Chr5 30708692 30714386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2336 21 314 U-box Gene Family AT3G54790 38.514 4.67e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2336 K08332 - gmx:100782472 472.626