Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2335 ATGTCAGAAGAAATGAAATCATTTACGGATTTGGGCTTATCTGTTCAATTGGTGGAAGCTTGTGAAAAAATGCGTTGGTATAGTCCACTTAAGATTCAGACAGAAGTGATTCCCCTTGCTCTACAAGGAAAAGATGATGTGATCGGAATTTCACCACCGCGTTCTGGTAAGGCCGGGGCTTTTGTTCTTCCTATATTGCAGGCCCTCTTAGAAGCCGGACCCAACCTAAACACGTCCTTTGCTTGTGTACTGTCTCCCTCAAGGGACCTTGTTTTTCGTATTGCTGAGTATTTTCAAGTTCTAGGTTCTCAATTTGGTGTCAAGTGTGCTACCCTTGTTGAAGCGAACGACATCATAGATCAAACCAACCAGATTTTACAGCAACCTCATCTTATTGTTGGAACCCTTCGACAAGTCTTTTATCACTTAAGACTAACCCAAGGATTTTCTCTTGCTAGATTAAAATACCTGGTCATACATGAGGCAGATCTGCTGTTGAATGACCAGTTCGAGGAACAACAACTAAATGATATTTTATCAATAATTCCTAGTGAGCGGAGAACTTTTCTTTTTTCATCTACAATGACAGAGAAGGTCCATATGATCCAAAGATTGTCTTTAAGGAACCCTCTAAAGATTGATGTATCTTCCAAATATTCTACTGTGGTCACACAGCTGCAGCAGAGTTGCTTTATGCCAGCAATGCTTAAGGATTGCTACCTTGTATACATTCTCACTGAAATGACTGGAAGAAAATCAACGGTATTCACTCAGACTTGTGGTTCAGCGTTTCTTCTGGCTTTAATTCTTAAGAATCTTGATTTCAGAGCCATCCCAATTATTAGTTATATGAGCCAGGCAAAGAAACTAGGAGCCCTGAATGCGTTCAAGTCTGGAAAGTTCAATATTCTCCTTTGTAGTGAAGCAGCTAGGAGGGGACTAGATATTCCAGCGGTAGATATGGTGATTAACTACAACATACCTAGAGATCCCAATGATTATATGCATCGTGTGGGATGGACTGGTCATGTTAATGCTGCCATTTCTTTTGTGAACCCATATGAAGCGGGACAACTTGAAATGATAGAGAGACATACAGGCAAGAAGCTACCGGTGTATCCGGCACCATGTGAGAATGTTTTGCTTTGGAGAGGGACTGTTAGGGAGGCCGAAAGATTAGCACGAAAGGAAATCAAAGAATCTGGTTGGAAGAGTGGAGGATATTTAGGAGACGAGGAGGTCAAAAAGATCTCAAGTCTGCGTTGA 1266 0.4139 MSEEMKSFTDLGLSVQLVEACEKMRWYSPLKIQTEVIPLALQGKDDVIGISPPRSGKAGAFVLPILQALLEAGPNLNTSFACVLSPSRDLVFRIAEYFQVLGSQFGVKCATLVEANDIIDQTNQILQQPHLIVGTLRQVFYHLRLTQGFSLARLKYLVIHEADLLLNDQFEEQQLNDILSIIPSERRTFLFSSTMTEKVHMIQRLSLRNPLKIDVSSKYSTVVTQLQQSCFMPAMLKDCYLVYILTEMTGRKSTVFTQTCGSAFLLALILKNLDFRAIPIISYMSQAKKLGALNAFKSGKFNILLCSEAARRGLDIPAVDMVINYNIPRDPNDYMHRVGWTGHVNAAISFVNPYEAGQLEMIERHTGKKLPVYPAPCENVLLWRGTVREAERLARKEIKESGWKSGGYLGDEEVKKISSLR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2335 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 361 IPR027417 -
Mtr5g2335 421 CDD SF2_C_DEAD 237 351 - -
Mtr5g2335 421 PANTHER RNA HELICASE 2 413 - -
Mtr5g2335 421 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 381 IPR001650 -
Mtr5g2335 421 Gene3D - 226 389 IPR027417 -
Mtr5g2335 421 SMART helicmild6 264 345 IPR001650 -
Mtr5g2335 421 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 213 IPR014001 -
Mtr5g2335 421 PANTHER BNAC02G41920D PROTEIN 2 413 - -
Mtr5g2335 421 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 6 34 IPR014014 GO:0003724
Mtr5g2335 421 Gene3D - 1 219 IPR027417 -
Mtr5g2335 421 SMART ultradead3 25 229 IPR014001 -
Mtr5g2335 421 Pfam DEAD/DEAH box helicase 31 200 IPR011545 GO:0003676|GO:0005524
Mtr5g2335 421 Pfam Helicase conserved C-terminal domain 240 343 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2335 Mtr-Chr5 30692156 30698584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2335 46 351 Eukaryotic Initiation Factors Gene Family AT5G11170 26.603 4.07e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2335 K14777 - gmx:100775796 458.759