Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2288 ATGGGTAGGCGAAAAAGTAAACCTCATCGATCAGGTGGGATAATAGTAGAAACAAATGCTAGTGCTGAAACAGAATTAGAAGTTGGAGGAAAAGAAAATAATGATTTTGGTGATATTTATAAACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCCGATGAACACCTTGATATTTCTGAAATTGTTCTTAGGGATTTAAATATAGGAGAAGGCTTTTATGGATTTGAATTGTCTGAGGATTTTTATCAGGATCCCCAATTCTCGTTAAGATTTCGGTTGTGCAATATCGGCAGTGATCTTGGTCGAATCAAACTTGGCCATTGGCCAGTGTTACCTTACACTGATATTCATCTAGAGTTTGTTAAAAGAGCTTCGGTTGACGATACCGAAACATGCACGGTGTTACTATCAGGTATTTTTGATGGACCTGATGAAAGTGTTTCTGGTCTTGTTCATTTGGCGAGTATGAAATTTGTTACATTGAGGGCAGTTCTTGGGATTAAGCTTTCGGACGACATTCCTTCCCTTAGGATGAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGAGTCACTTATTGAGGGTTCTAGAAAACCATGGAAAAAGAGTATGATGAATGTTATGTCTTGGTTACGACCAGAAATAATGACTTCAGAAGTTAAGTATGGGTTTAGTAGCTATATGGAAATGGAAGTTGATTTGCAGACAGACATGGCAGACGACGGTGGCTATGCAGGGAAATGCTCGAGGTTCGATCCTGCTGGTTTTTATGAAGCCATCAAGCCTTCAAAAACAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTGAACTGAGGCCATATCAACGGCGTGCAGCTTTGTGGATGGTAAAACGAGAAAAAGCAATGGAAGATCAGGCTGAAATAGAAAGAAATCAGTTTCATTCTCCATTATGTGTGCCAGTGGATTTTCTGGACACAAGGTCTAAAATGTTTTTCAACCCTTTCAGTGGAAATATTTCCTTGTGTCCAGAGACTTCGTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTGGGAAAAACTGTAGAATTGCTTGCTCTCATCTTTGCTCACCGGAGATCAGCAGATGAAAGTGACACACTAATTGATTCAGTGCCCCAAGTCAAGGGCGACGAAAAAGTCGTTTTGAAAAGACTCAGAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTCAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGGAGATTGTGTTGGTTATTCAACTAAAGGAAAATCACTGAAATCAAAACAAGGATTGGAAAGCAAGACATCTAAAACCACCATAGCTGTGACAAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCTTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTACCCCAGTGGCATGACGAAATTATACGTCATACACGCCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTGCGTGACACATCTTTCTCCAATTCCTCTCTGATGGATATCGGTGATCTTGCCAGTGCGGACATTGTATTAACTACATATGATGTGCTTAAAGATGATTTGTTCCATGATTCTGATAGACATATAGGCGATCGACACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGTTACCGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCATTACAGGGACCCCGATTCAGCGAAAGTTTGATGACTTATATGGACTTTTAAGGTTCACCAAAACCGGTCCTTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAAGGAGATATGGGAGCTACGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGCAGATGAACTGGAATTGCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAACACTTTTACAAGAGGCAACATGAAGCTTGTGTTAGAGACTCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTTCGAGTGGTTCCTCCGATCCATTAATCACTCAAGCGGAGGCAGGGAAGCTATTGAATGCTTTGCTAAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGATTGCGTTCCCTGCAGCAGTCACCTATGACAATGGAGGAAGTACTAACGGTCCTTATAAGCAAGACCAAGATAGAAGGTGAGGAGGCTCTCAGGAGGTTAGTTATTGCTCTGAATGCGCTTGCAGCAATAGTAACAATACAAAACGATTTTTCTCAAGCTGCTTCGCTGTACAATGAATCTCTTACTTTAGTTGAAGAGCATTCTGAAGATTTTCGTCTGGATCCGTTGTTAAATATCCACATTCATCACAATCTTGCCGAAATATTCCCTCTGGCTGAAAATTTTGCTTTGAACTTGCCATCCAAAGGAAAACAATTCTCTGGGACTTCCGCAGTTAATACAACCAAAAAGCATTATATTGTAAAGGTTGATAATGATCAAGTGAAGAGGCATAAAATCAGTAACTGCGGTGACACAAGTTTAACTGGGGCTGCTTCAGATCCATCAAATGTTGCATCTAGTAGTAGTTCAGAAAATGGATTAAATGATAGGGAATCTGATGATTTGTCGGCCAGTTCTGTCAAATATCTGAAAGCACAATGTGAAGATTCAAAACATAAATACTTATCTGTGTTCAGTTCAAAGCTAGTTGCAGCTCAGCAGGAGTTTCAAAGCTCTTACATGCAGGTTTGTAATGCTTATCACGACACCAGTACAAATCAAAATACATTATGGTGGTTAGAAGCACTTCACCACGCTGAGAAAGATAAGGATTTCTCAACTGAGTTGATTAGAAAGATTGAAGAATCCATCTCAGGAAATTCAAACAATTCAAAATCGTCAAGATTAGCTGCTCGTTTTCGGAGCATAAGCTCTCTGACGTATGAAATTCAAACCGGATTGGATCAGTTAGTAGCCTCAAGGAAAGTGGTATTAGATCGTCTGTTAGAAATTGACCAGACCATGGAAAACCCAAAAGATGAAGATATTGAGCGCGTTGGTAAATGTCGAAATTGTCAACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAATTGTTTCAGCACTACGAAGCTAGACTCTTTGTTCTCAAGAACGAACGTGGAGATATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGAAAAGTTTTGCTCGGAATCATTTCCTCTCAAACCTATCACAATCTAATCAAAGTTCATCAGTATCTGATATTGATAATGAAGAGTCCAGAAAAAGGAATGTTGGGCAGAAAGTTGTGACTTCAAGATCGGCATCTATCCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCGGTTTGGAAAGGACAGTGCCTCAGCAGCGACCAAACATTTACATATTCTTGAGGGAATGCGAAAGGAGTTTGTCTATGCAAGATCTTTGGCATCAGCTCAAGCTCAATATCTGCGTGCTCATGATGAAATCAAGATGGCGGTTTCTCGTTTACACCTAAGGGAAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTATATGCGGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCGTTGGCCTTGTTGTCACAGATAAAAGGAAAGCTACGCTACCTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATCGGAAAGTCCAGATAACTCTTCATGCACTCAAGATACAAATTCCATGTCAAACTCTACGGAAGAGAAGGGTGAACTCATACCTAAAACTTATGAGGAATCATGCCCAATTTGTCAAGAAAAGCTAGGCCATAAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAAATGTTTAGTTGCTATGACTGAGAAAAGACTTAAACATAGCAAGACTCATACTTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTATAGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCGTCAATGCTACATACAATTGACAATTGTGAAAAACACGAAGCATCCATTACTGTTGAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATAAAGGCTACAAATCATAACTCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCCACCAACAACATCACTTTCGTCCGGATGAAGGGAGGCAGGAAAGCACACACTGCCATAAGTCAATTTAGAGGAATACAGAATGGCACAAAAGGATGTGAGGGGGAAGAGCCAATATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGCCGTGTACATCGGATTGGCCAAAAACAGAAGACCCTCATTCACCGTTTTTTAGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAATCATTTATTCATTAGTGGCAACACAAAAAATCAAGATCAACCTGTTTTGACCCTAAAGGATGTGGAATCCTTGTTGGCAAGAGCACCAATAACTGCGCCGGAAATCGATGAAAATCCTAATAATACAAATACAAACCTGAGAGACCTGCCACCATCACTTGCAGCGGCAATAGCGGCCGAGAGAAGATATAATGAGCATAGAACATGA 5001 0.4065 MGRRKSKPHRSGGIIVETNASAETELEVGGKENNDFGDIYKPYFVEVDRSGWLSDEHLDISEIVLRDLNIGEGFYGFELSEDFYQDPQFSLRFRLCNIGSDLGRIKLGHWPVLPYTDIHLEFVKRASVDDTETCTVLLSGIFDGPDESVSGLVHLASMKFVTLRAVLGIKLSDDIPSLRMRVEVLKSAFDACESLIEGSRKPWKKSMMNVMSWLRPEIMTSEVKYGFSSYMEMEVDLQTDMADDGGYAGKCSRFDPAGFYEAIKPSKTEPMLEDDIPELLPELRPYQRRAALWMVKREKAMEDQAEIERNQFHSPLCVPVDFLDTRSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLALIFAHRRSADESDTLIDSVPQVKGDEKVVLKRLRRERVECICGAVSESLKYEGLWVQCDICDAWQHGDCVGYSTKGKSLKSKQGLESKTSKTTIAVTNGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVRDTSFSNSSLMDIGDLASADIVLTTYDVLKDDLFHDSDRHIGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESTVVTAATEMALRLHCKHRWCITGTPIQRKFDDLYGLLRFTKTGPFNIYRWWSEVIRDPYEKGDMGATEFTHRVFKQIMWRSSKQHVADELELPSQEECLSWLTLSPVEEHFYKRQHEACVRDSHEVIESLRNDILNRKVPDSVSSSGSSDPLITQAEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEVLTVLISKTKIEGEEALRRLVIALNALAAIVTIQNDFSQAASLYNESLTLVEEHSEDFRLDPLLNIHIHHNLAEIFPLAENFALNLPSKGKQFSGTSAVNTTKKHYIVKVDNDQVKRHKISNCGDTSLTGAASDPSNVASSSSSENGLNDRESDDLSASSVKYLKAQCEDSKHKYLSVFSSKLVAAQQEFQSSYMQVCNAYHDTSTNQNTLWWLEALHHAEKDKDFSTELIRKIEESISGNSNNSKSSRLAARFRSISSLTYEIQTGLDQLVASRKVVLDRLLEIDQTMENPKDEDIERVGKCRNCQPNCDGPPCVLCELDELFQHYEARLFVLKNERGDIISSAEEAVDFQKKSFARNHFLSNLSQSNQSSSVSDIDNEESRKRNVGQKVVTSRSASILEVLLGVIKNYCKTRFGKDSASAATKHLHILEGMRKEFVYARSLASAQAQYLRAHDEIKMAVSRLHLRENEDDKSLDALGENELYAASSNFSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPSESPDNSSCTQDTNSMSNSTEEKGELIPKTYEESCPICQEKLGHKRMVFQCGHVTCCKCLVAMTEKRLKHSKTHTWVMCPTCRQHTDYRNIAYAVDAQKESPNSSMLHTIDNCEKHEASITVEGSYGTKIEAVTRRILWIKATNHNSKVLVFSSWNDVLDVLEHAFATNNITFVRMKGGRKAHTAISQFRGIQNGTKGCEGEEPISIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKQKTLIHRFLVKDTVEESIYKLNRSRSNHLFISGNTKNQDQPVLTLKDVESLLARAPITAPEIDENPNNTNTNLRDLPPSLAAAIAAERRYNEHRT* 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2288 1666 CDD DEXQc_SHPRH 283 682 - -
Mtr5g2288 1666 Pfam SNF2-related domain 286 778 IPR000330 GO:0005524|GO:0140658
Mtr5g2288 1666 MobiDBLite consensus disorder prediction 921 949 - -
Mtr5g2288 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1420 IPR013083 -
Mtr5g2288 1666 SUPERFAMILY FYVE/PHD zinc finger 404 476 IPR011011 -
Mtr5g2288 1666 SMART ring_2 1352 1399 IPR001841 -
Mtr5g2288 1666 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1648 - -
Mtr5g2288 1666 CDD PHD_TCF19_like 409 474 - -
Mtr5g2288 1666 MobiDBLite consensus disorder prediction 1163 1183 - -
Mtr5g2288 1666 ProSitePatterns Zinc finger PHD-type signature. 408 474 IPR019786 -
Mtr5g2288 1666 Gene3D - 345 397 IPR038718 -
Mtr5g2288 1666 MobiDBLite consensus disorder prediction 1314 1342 - -
Mtr5g2288 1666 Gene3D - 1421 1639 IPR027417 -
Mtr5g2288 1666 MobiDBLite consensus disorder prediction 921 942 - -
Mtr5g2288 1666 CDD SF2_C_SNF 1443 1580 - -
Mtr5g2288 1666 SMART ultradead3 279 651 IPR014001 -
Mtr5g2288 1666 MobiDBLite consensus disorder prediction 1314 1341 - -
Mtr5g2288 1666 Pfam PHD-finger 408 476 IPR019787 -
Mtr5g2288 1666 ProSiteProfiles Zinc finger RING-type profile. 1352 1400 IPR001841 -
Mtr5g2288 1666 Pfam Helicase conserved C-terminal domain 1448 1569 IPR001650 -
Mtr5g2288 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 676 IPR027417 -
Mtr5g2288 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 1618 IPR027417 -
Mtr5g2288 1666 SMART PHD_3 407 475 IPR001965 -
Mtr5g2288 1666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1449 1620 IPR001650 -
Mtr5g2288 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 449 IPR013083 -
Mtr5g2288 1666 Gene3D - 450 683 IPR038718 -
Mtr5g2288 1666 SMART helicmild6 1477 1569 IPR001650 -
Mtr5g2288 1666 SUPERFAMILY RING/U-box 1347 1405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2288 Mtr-Chr5 30066003 30082138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2288 486 776 RAD5 or RAD16-like Gene Family AT5G43530 31.333 2.66e-32 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr5g2288 SNF2_N 4.1e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2288 K15710 - gmx:100776659 2603.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2288 5 30066003 30082138 Mtr5g2288 5 30066003 30082138 ECH