Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2284 ATGGATAATAATATCCCTGAAAGTGTGAGAAAGAAAGTGATAATCAAAGAACTTGTCAAGGGTCAAGAAGCTGCAACCAAACTCAAGTTTCTTCTTCAGAATGAGAATCCCTATGGAGCTGATCATCTTGCTGCATATGTGCTGAGATCTTTCACTGAGGCTCTTTCTATTATCTCTCAACCAAGTTGTGATGATTTTCTGAATCTAATTAAATCTGCAGATTCTATTAATGAAAGTAGGAAGAAAGGAAGAAGAGGTTGCTACAAAAGAAGGAAGAGTGCAGCTGAGATATGGACCATAGTTTCCCAAACCATTGTTGATAATCATTCATGGAGAAAGTATGGGCAGAAGAAAATCATGGATTCTGAATTCCCCAGGTGTTCACATAAAGATGATCAAGGTTGCTCAGCAACCAAACAGGTGCAAATGACACATGACAATCCTGACATGTATCAAACTACATACATTGGCATCCACACATGCAACAACACTCCTAAAGCAAGTACTTCTAATGAGGCAATATTTGTGAATTCTGATGCTGAAGTAACACCAACACCAAGCCTAACTATAAAACAAGAATATCTCAAAGAAGAAACTCCGAGTAATGTTATGGAATGTGATGATGCAGATGATATGCTAGTGTTTCAAAATCTAGCACTGGAATTTGGGGACATTGAATTCAACTTTGATGAAAATTAA 699 0.372 MDNNIPESVRKKVIIKELVKGQEAATKLKFLLQNENPYGADHLAAYVLRSFTEALSIISQPSCDDFLNLIKSADSINESRKKGRRGCYKRRKSAAEIWTIVSQTIVDNHSWRKYGQKKIMDSEFPRCSHKDDQGCSATKQVQMTHDNPDMYQTTYIGIHTCNNTPKASTSNEAIFVNSDAEVTPTPSLTIKQEYLKEETPSNVMECDDADDMLVFQNLALEFGDIEFNFDEN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2284 232 Pfam WRKY DNA -binding domain 107 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2284 232 Gene3D WRKY domain 95 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g2284 232 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 206 IPR044810 GO:0003700
Mtr5g2284 232 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 7 206 - -
Mtr5g2284 232 ProSiteProfiles WRKY domain profile. 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g2284 232 SUPERFAMILY WRKY DNA-binding domain 102 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g2284 232 SMART WRKY_cls 105 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2284 Mtr-Chr5 29956166 29960927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2284 1 193 WRKY Transcription Factor Family AT3G56400 37.333 5.78e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g2284 WRKY 2.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2284 - - mtr:MTR_5g067700 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3244 3 46330312 46332529 Mtr5g2284 5 29956166 29960927 ECH
Mtr5g2284 5 29956166 29960927 Mtr5g2284 5 29956166 29960927 ECH