Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2270 ATGCCATGTCCGAATGCAAACCATGGTTGCAAGGAGAAAATAAGTTACACTGGAAATAGGAAGCATGAAGACGAATGCATCTACTTTCCATGTTACTGCCCTCTTTCTGGTTGTGACTTTGCTGCATCATCAGAAGTGTTGTCCAACCATTTCAGCCATAAACATGGGGATTCTCGAATCAAATTTTCTTATGGTCACTCCTTCAATGTCTCTTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAACTGAGGGCAAACTATTTATTCTCAATAATAGAACCACACTTTTGGGAAATGGAGTCAATATTTGCTGCATTGGTCCTAACTCTTCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGTCTCAGATATGCAAACTGACTTTACAGTCTTTTGTGAAGAACGTCCAAGAGGTTGCTTTAGCAACTCCTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCTTCCGAACCTCTCAAGCTAGATATTTGTATAACCCCCATGATGCAAATCTACGTGGAAGATCTGATTGGAAAGACAATTCCCCTGAGGGTTGAGAGTTCAGACACGATAGTCGATGTGAAGAAGAAGATTCTTGACAAGGAAGGGATCCCAATACACGAGCAACGTCTAATCAACGACGGTAAGCAACTAGAGGACAATCTTACCCTTGCCAGTTACAACATCCAAGAGAACTCAACCATCCTCCTTGTCCTCCGCCTCCATGGGAGCTAG 744 0.4194 MPCPNANHGCKEKISYTGNRKHEDECIYFPCYCPLSGCDFAASSEVLSNHFSHKHGDSRIKFSYGHSFNVSLKSNDETIVLQEETEGKLFILNNRTTLLGNGVNICCIGPNSSESEYSYDILARSQICKLTLQSFVKNVQEVALATPSSELLVIPFGSSEPLKLDICITPMMQIYVEDLIGKTIPLRVESSDTIVDVKKKILDKEGIPIHEQRLINDGKQLEDNLTLASYNIQENSTILLVLRLHGS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2270 247 ProSiteProfiles Ubiquitin domain profile. 172 247 IPR000626 GO:0005515
Mtr5g2270 247 Pfam Seven in absentia protein family 1 153 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr5g2270 247 SUPERFAMILY Ubiquitin-like 151 246 IPR029071 -
Mtr5g2270 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 173 - -
Mtr5g2270 247 SUPERFAMILY TRAF domain-like 2 169 - -
Mtr5g2270 247 PRINTS Ubiquitin signature 182 202 IPR019956 -
Mtr5g2270 247 PRINTS Ubiquitin signature 203 223 IPR019956 -
Mtr5g2270 247 PRINTS Ubiquitin signature 224 245 IPR019956 -
Mtr5g2270 247 ProSiteProfiles Zinc finger SIAH-type profile. 1 56 IPR013010 GO:0008270
Mtr5g2270 247 Gene3D - 168 247 - -
Mtr5g2270 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 173 IPR044286 -
Mtr5g2270 247 Pfam Ubiquitin family 176 244 IPR000626 GO:0005515
Mtr5g2270 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 51 IPR013083 -
Mtr5g2270 247 SMART ubq_7 172 243 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2270 Mtr-Chr5 29820139 29821502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2270 172 247 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 68.421 2.79e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2270 K04506 - mtr:MTR_4g058025 186.808