Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2268 ATGTCTCTACCAAGGCTAGGGATAGGTGATGAGGAAAGTAAAAGCAATGTTACTTTGTTGGAAAAAAGTTTGCATTTGAATGGTTCAAAACCAAAAGAGTTCAACTACATGGGATTACCATCCTCTAATTGTTCATCAGTGGATAGTTCAGTTCCAAAAATTCAATCTTTTAAAGATGAGACCAAAAGTAATTTGAATCTTAAAGCTACTGAGCTTAGATTGGGACTTCCAGGATCACTTTCTCCTGAAAGAGATTCATCAGATTTTTGTTTGAGAAGTTCAAAGCAGTTTGATGAAAAGCCTCTTTTTCCTTTGCACCCTCAAAAAGATGATCATCTTTTTGAATCAAAGCCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTTTCAGAGGGGAAATTGAAGCCTAGCTCCAAAATGCTTGAGAATGTTGCCGGGCAGAAAGTGAAAGCCGATGAAATAGCAACAGTTAAGATTGGTCTTGAGAGACCTAATGGTGTTGGTGAAAGCAAACCAGGTCTTAATGGTTCTGCAAATAATGGAAATAGCACTGCTCCTGCTAGCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAAAATTCATTAACAACTGCTTCAAAGAACACTGAAGAGGTTGATGGAAAATTGGGATCAGGAGGTGCAGTGTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATTTAAGAAAAGTAGACTTGAAGAATTACACTGCATATTCAGAACTATCTTCTTCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAACCAGATGCTGAATGAAACCAAGCTGAGGGATCTGCTTCATGGGTCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTCGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGGAGACTAAGAATCATGAAGAGCTCTGATGCCATTGGTTTAGCCCCCAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAA 1044 0.3898 MSLPRLGIGDEESKSNVTLLEKSLHLNGSKPKEFNYMGLPSSNCSSVDSSVPKIQSFKDETKSNLNLKATELRLGLPGSLSPERDSSDFCLRSSKQFDEKPLFPLHPQKDDHLFESKPAVLGNKRGFSDAMNVFSEGKLKPSSKMLENVAGQKVKADEIATVKIGLERPNGVGESKPGLNGSANNGNSTAPASKAQVVGWPPIRSFRKNSLTTASKNTEEVDGKLGSGGAVFVKVSMDGAPYLRKVDLKNYTAYSELSSSLEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2268 347 Gene3D - 226 341 - -
Mtr5g2268 347 MobiDBLite consensus disorder prediction 168 195 - -
Mtr5g2268 347 SUPERFAMILY CAD & PB1 domains 226 328 - -
Mtr5g2268 347 MobiDBLite consensus disorder prediction 177 194 - -
Mtr5g2268 347 Pfam AUX/IAA family 70 338 IPR033389 -
Mtr5g2268 347 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 341 IPR003311 GO:0005634|GO:0006355
Mtr5g2268 347 ProSiteProfiles PB1 domain profile. 230 329 IPR000270 GO:0005515
Mtr5g2268 347 PANTHER AUXIN-INDUCED PROTEIN 19 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2268 Mtr-Chr5 29796039 29799869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2268 214 337 B3 DNA Binding Superfamily AT4G23980 29.839 3.02e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr5g2268 AUX_IAA 5.6e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2268 K14484 - gmx:100815447 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2268 5 29796039 29799869 Mtr5g2268 5 29796039 29799869 ECH