Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2262 ATGGTGTTAAGAAAAGTAGGTAAGTATGAAATTGGAAGAACAATTGGTGAAGGAACATTTGCGAAAGTTAAATTCGCTCAGAATACTGAAACTGGTGAAAGTGTTGCTATGAAGATTCTTGATCGTAGCACAATCATCAAGCATAAAATGGCCGATCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGACATCCATATGTTGTTCGCCTGCATGAGGTTCTGGCGAGCCGTACTAAGATTTATATCATATTGGAGTTCATCACAGGTGGTGAATTGTTTGATAAAATTGTACACCATGGGCGTCTTAGTGAAGCTGAAGCTAGGAGATACTTCCAACAGCTTATTGACGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAACCTTTTACTTGATTCACTGGGAAATATGAAGATTTCAGACTTCGGTTTGAGTGCATTGCCAGAACAAGGGGTTAGTATGCTGCGGACAACTTGTGGGACTCCTAATTATGTAGCTCCTGAGGTACTCAGTCACAAAGGTTATAATGGTGCTCCAGCAGATGTTTGGTCTTGTGGAGTTATCCTTTATGTTCTGATGGCTGGATATCTTCCCTTTGACGAGCTTGATCTAACCACGTTATACAGTAAGATTGACAAAGCCGACTTTTCATGCCCTGCTTGGTTTCCTGTGGGAGCGAAATCTTTGATACAGAGGATTTTGGACCCAAACCCTGAACATCGTATAACCATTGAGCAGATTCGAAATGATGAGTGGTTTCAGAAAAGCTATGTTCCTGTCCATCTCCTTGAGTATGAAGATGTAAATCTGGATGAGATAAATGCTGCATTTGACAGTGCTGAGGATGAGGGGGATAATCCACAGTGTGAGATTGCGGACACGGGTCCTCTGATTCTTAATGCATTCGACATGATAATGTTATCTCAAGGCTTAAATCTTGCAACAATATTTGATCGTGGACAGATGAGAATAGAGGGTATTTCGGCAAAAAAGACAACTCATTTCTCAGTTATACTTGAAGTTTTTGAAGTTGCTCCCACATTTTTCATGGTGGACATTCAGAAAGCAGCTGGAGATGCTAGTGAATATCTCAAGTTTTACAAGAATTTTTCTAGCAATCTTGAGGATATCATCTGGAAATCCCCTCATGAAACAAGCAAATTGAAGACCTCCAAGACTAGAAGCAAAAGACATTAG 1224 0.4011 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKILDRSTIIKHKMADQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAEARRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNMKISDFGLSALPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLMAGYLPFDELDLTTLYSKIDKADFSCPAWFPVGAKSLIQRILDPNPEHRITIEQIRNDEWFQKSYVPVHLLEYEDVNLDEINAAFDSAEDEGDNPQCEIADTGPLILNAFDMIMLSQGLNLATIFDRGQMRIEGISAKKTTHFSVILEVFEVAPTFFMVDIQKAAGDASEYLKFYKNFSSNLEDIIWKSPHETSKLKTSKTRSKRH* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2262 407 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2262 407 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2262 407 Gene3D Transferase(Phosphotransferase) domain 1 3 301 - -
Mtr5g2262 407 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2262 407 PANTHER - 2 329 - -
Mtr5g2262 407 PANTHER - 330 404 - -
Mtr5g2262 407 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Mtr5g2262 407 SUPERFAMILY Protein kinase-like (PK-like) 6 275 IPR011009 -
Mtr5g2262 407 Pfam NAF domain 305 332 IPR004041 GO:0007165
Mtr5g2262 407 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Mtr5g2262 407 CDD CIPK_C 309 385 - -
Mtr5g2262 407 Gene3D Kinase associated domain 1, KA1 327 389 - -
Mtr5g2262 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Mtr5g2262 407 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 330 404 - -
Mtr5g2262 407 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2262 Mtr-Chr5 29699873 29710087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2262 1 349 CBL-interacting serine-threonine protein kinases AT4G24400 73.711 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Mtr5g2262 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2262 - - gmx:100813117 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2262 5 29699873 29710087 Mtr5g2262 5 29699873 29710087 ECH