Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2260 ATGGAGTACCAAAGCTTCAATTCCTCACCCAACTATCATGAATTGCTTAAGCATCGTTCTTCCTACACTTCTTCCAAAGTCAAGCTTATGGTTAGCTTTGGAGGAGAAATCAGACCTAGCCTTCAGGACGATCATCATTTTTGGTACATTGGTGGAACCACCAAAATTATCATGGTTGATCGTAATATCAAATTCTCCGACCTCGTTGAAAAGCTTTCTTCAACCATGTTTGCTGATGCTTGCTTCAAGTACCAGCTCCCTGGTGAAGATCTTAATGATTTGATCTCCGTTCACAACGATGATGATCTCGAAAATATGATGGTCGAGTATGATCGTATGTGTCGCGCTTCTCCAAAGCAGCCGGTAAGATTGAGGCTTTTCCTCTTCCCTGTTCGTGCTAACAACAAGAACGGCCACAATTCAAGATCTTACAGTCTCTTTGAGTTGCTCAATTCCGTTCACGTTCCAAAATTTGAAGATTCATCTCCTCCGCCAATGGAAGATTCAACTCCACCTCCTCCTCCGCCACCGGAAGATTCATCTCCACCTCCTCCCTCGTTGACAACCATGAATCCTGATTTGAGTCAGGTGGAATGTCCGGAGACTTTACCGGATTTGGCAGCAAAGGATACGAATTGTGGGCCGGAGATGGTTGTCGAAACCAAGATTCAGGAAATTCAGAAGGTGGAATCTGTGATGGATGAACAGGAAGTGAAAGTTGACGGAGAAAACGGCGATGTTGAAGTTTACCCCGAAGAAAACGCAGAGAAAGTGATTTCGTTAGTTACTGATGAACCTGCTGAAGAACCTGCTGCTGCTGAGGATCCGGTTCCAGAAGCTCCTCCTGGTTCGTTTTGTTCCTGTGGAGTTCAATTTCCTGAACCGGGTTTGGTTCCTGAACCGCTTTCAGTTCAGTCATCATTTACTCCAGAAATGCACAATTTGGCTGCTGATGGTTATTACTCGACGGGGTATTCAACTGAACTGTTACCGGTTTATTTGATTCCAACATCTTCAGGATTGTACCAAGCAATGAGGCCGGTAACCGGACCAATTGGTGAACCGGTTTATTTCGCGTATGTGCCTGTTGTCAATGAGGTTGATTACAATGGTGGTCAGTATGCACCTAACGGATCAGCCTTGCCATTGTAG 1152 0.4505 MEYQSFNSSPNYHELLKHRSSYTSSKVKLMVSFGGEIRPSLQDDHHFWYIGGTTKIIMVDRNIKFSDLVEKLSSTMFADACFKYQLPGEDLNDLISVHNDDDLENMMVEYDRMCRASPKQPVRLRLFLFPVRANNKNGHNSRSYSLFELLNSVHVPKFEDSSPPPMEDSTPPPPPPPEDSSPPPPSLTTMNPDLSQVECPETLPDLAAKDTNCGPEMVVETKIQEIQKVESVMDEQEVKVDGENGDVEVYPEENAEKVISLVTDEPAEEPAAAEDPVPEAPPGSFCSCGVQFPEPGLVPEPLSVQSSFTPEMHNLAADGYYSTGYSTELLPVYLIPTSSGLYQAMRPVTGPIGEPVYFAYVPVVNEVDYNGGQYAPNGSALPL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2260 383 MobiDBLite consensus disorder prediction 165 189 - -
Mtr5g2260 383 MobiDBLite consensus disorder prediction 157 197 - -
Mtr5g2260 383 Gene3D - 48 129 - -
Mtr5g2260 383 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 8 366 - -
Mtr5g2260 383 SUPERFAMILY CAD & PB1 domains 43 135 - -
Mtr5g2260 383 SMART PB1_new 26 131 IPR000270 GO:0005515
Mtr5g2260 383 Coils Coil 219 239 - -
Mtr5g2260 383 CDD PB1_UP2 30 129 - -
Mtr5g2260 383 Pfam PB1 domain 49 130 IPR000270 GO:0005515
Mtr5g2260 383 PANTHER OS05G0427100 PROTEIN-RELATED 8 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2260 Mtr-Chr5 29685104 29686255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2260 20 131 MAP Kinase Kinase Kinase AT1G79570 40.179 2.99e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2260 - - mtr:MTR_5g067120 707.597