Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2258 ATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCGACGAGCAGGCAAGTAACTTTTTCGAAGCGAAGGAATGGATTGTTGAAGAAGGCGAAGGAACTTGCGATTTTGTGCGATGCTGAGGTTGGGGTTATGATCTTCTCCAGCACTGCAAAACTCTATGATTTCGCCAGCACCAGCATGAGATCAGTAATTGATCGGTACAACAAAACTAAAGAAGAACACAATCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGTGAAGAATTATCAGGTTTGACAGTCAAAGAATTACAGGGTTTGGAGAACCAGTTGGAAATCAGCCTTCGTGGTGTTCGTATGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAACTAAATCGAAAGGGAGACATCATACACCAAGAAAATGTTGAACTGTATCGTAAGGTAAACCTAATTTGTCAAGAAAATATGAAATGGAAAAAGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAGTTTTGAGTCTCACAAATGGTGTAGGCATAGGAGACGATTCAAATGTACCTGTGAATCTCCAGCTCAGCCAGCCACAGCAGCAACACTACAAGGCTCCTTCAGGAACTACAAAACTAGGGTAG 708 0.4068 MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSMRSVIDRYNKTKEEHNQLGSSTSEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTVKELQGLENQLEISLRGVRMKKEQLFMDEIQELNRKGDIIHQENVELYRKVNLICQENMKWKKKVYGTKDKNGTNRVLSLTNGVGIGDDSNVPVNLQLSQPQQQHYKAPSGTTKLG* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2258 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Mtr5g2258 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Mtr5g2258 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g2258 235 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr5g2258 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Mtr5g2258 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g2258 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g2258 235 Coils Coil 86 106 - -
Mtr5g2258 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2258 Mtr-Chr5 29611830 29640048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2258 1 231 MADS-box Gene Family AT2G22630 59.740 1.05e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g2258 K-box 4.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2258 K09264 - gmx:100812413 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2258 5 29611830 29640048 Mtr5g2258 5 29611830 29640048 ECH