Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2255 ATGTCCTCACAAGCAGTGCAATTGCGTATCAAGAGTAATCATGTGGTTATGGACAATGGTATAGTGCAAGTGTATTTATCCAATCCTGGTGGATTTGTAACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAAGAATAATAGAGGGTATTGGGATGTCGTTTGGAGTGAATATGGAAGTACAGGAACAACCGGAACATTCGAGCGGATTGTGGGAACAAGTTTTAATGTGATAATGGAAACAGAAGAACAAGTTGAAATCTCATTTAAAAGAACATGGAATCCATCTCTAAAGGGAAAGTTGTCACCTCTAAATATAGACAAAAGGTATGTGATGCTACGTAATTCCTCAGGATTTTATTCATATGCTATCTTTGAACACCTAAAGGAGTGGCCAGCTTTCAACATACCTCAAATCAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGCTATGGCTGATAATAGGCAAAGGTTGATGCCTCTCCCTGATGATCGATTACCTGGAAGAGGAAAAGAACTTATTCCCCCAGAAGCTGTTTTGCTTGTAAATCCCATCGAGCCAGAATTTTTAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAGAACATAAACCTTAAGGTTCATGGATGGATAAGTGCAGAGTCTGAAACAATTCCAGCAACAGGTTTTTGGGTAATCATACCTAGCAATGAATTTCGATCAGGTGGTCTTGTTAAACAGAATCTTACCTCCCATGTTGGCCCCATCAGCCTTGCAATGTTTCTTAGTGCACATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCTAATGAGCCATGGAAAAAAGTTTTTGGGCCAACTTTTGTCTATCTTAACAACTTGTTGGATCATGATGAGGACCCACTAGCTCAACTCTGGGAGGACGCCAAATTTCAGATGAACAAAGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAAGGCTAGCCAAAGGGGTAGCGTTTGTGGCACGTTACTTGTTCGTGACAGGTGTGTAAGTGACAAGGACATAATAGCAAAAGGTGCATATGTAGGATTAGCCCCACCAGGAGATGCTGGATCTTGGCAAAGGGAATGCAAGGGATACCAATTTTGGAGTAAATCAAACGAGGAAGGCTACTTTTCAATCAATAATATACGGAGTGGTGATTACAATCTATATGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGTTGTCCTCAAAATAACCCCAGGTTGCGAGATAAATGTTGATGACATAGTCTTTGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGCTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTTTAAAGACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAGCTATACCCAAATGAAGATTTGATTTATAATGTTGGTGTTAGTGACTACACAAAAGATTGGTTCTATGCACAAGTCACCAGGAAGAAAAATGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACATGGATGATGTTCAAGAAAATGGACTGTATAAATTAAGATTAGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAATGATGAAAAACAAGATCCTCCACTATTTACTACGGGAGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGGTGTGCCAAGTATTTTGCTAATCAAAGGAGATAATACTATTTTTCTAACACAAACTATGGCTACTGGTCCCTTGCCCCTTTTTCAGGGAATAATGTATGATTATATTCGTTTAGAAAGCCCCTATTAA 1935 0.3917 MSSQAVQLRIKSNHVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEYGSTGTTGTFERIVGTSFNVIMETEEQVEISFKRTWNPSLKGKLSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAMADNRQRLMPLPDDRLPGRGKELIPPEAVLLVNPIEPEFLGEVDDKYQYSSENINLKVHGWISAESETIPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNNLLDHDEDPLAQLWEDAKFQMNKEVQSWPYDFPASDDFQKASQRGSVCGTLLVRDRCVSDKDIIAKGAYVGLAPPGDAGSWQRECKGYQFWSKSNEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNVVLKITPGCEINVDDIVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLFKDHPDKFRQYGLWERYAELYPNEDLIYNVGVSDYTKDWFYAQVTRKKNDGSYQGTTWQIKFNMDDVQENGLYKLRLALASANVSELQVRVNDEKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIGVPSILLIKGDNTIFLTQTMATGPLPLFQGIMYDYIRLESPY* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2255 644 Pfam Polysaccharide lyase family 4, domain II 363 435 IPR029413 -
Mtr5g2255 644 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Mtr5g2255 644 Pfam Polysaccharide lyase family 4, domain III 449 640 IPR029411 -
Mtr5g2255 644 CDD RGL4_M 340 439 IPR029413 -
Mtr5g2255 644 Coils Coil 553 573 - -
Mtr5g2255 644 CDD RGL4_N 12 297 - -
Mtr5g2255 644 Gene3D - 5 278 IPR014718 GO:0030246
Mtr5g2255 644 Gene3D - 447 641 - -
Mtr5g2255 644 PANTHER LG27/30-LIKE GENE 1 643 - -
Mtr5g2255 644 CDD RGL4_C 451 641 - -
Mtr5g2255 644 SUPERFAMILY Starch-binding domain-like 338 436 IPR013784 GO:0030246
Mtr5g2255 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 643 - -
Mtr5g2255 644 Gene3D - 337 433 - -
Mtr5g2255 644 SUPERFAMILY Galactose-binding domain-like 446 641 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2255 Mtr-Chr5 29549455 29557152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2255 1 643 Polysaccharide Lyase AT1G09890 64.386 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2255 K18195 - gmx:100815677 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2255 5 29549455 29557152 Mtr5g2255 5 29549455 29557152 ECH