Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2246 ATGGAACCACCAATGTACGATCACTCTCAACCCTTGAACACCACCGTACCAATCACCGCTGGCGAAAGCGACGACGGTTCCGGCCCCGACGCCGGCGTCGACGCTCAACATCAAATTCAATACGAAACTCACGGTATGGATGATTCCAACTCCGATGCTGTTTACGGCAACGGCAGTGAAAATCCTGAATTCGCACTTCAAAGTTTTGATGAATCTGATCAGCTGACGCTGTCGTTTCGTGGTCAAGTTTATGTCTTTGATTCTGTTACGCCCGCTAAGGTTCAATCGGTGTTGTTACTGTTGGGTGGATGTGAACAACCTAATGTTGGTGTGAATGCGGTGCCTCAACAAAGTTTGAGGGTGGAATCAATGGATTTTCCTACAAAATATAGTCAACTGCATCGAGAAGCCTCATTACTTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTCAGGATGCAGCGAAAGAAGGGTCAATTTACTACATCTAAGAAACAAGATGGGTCCAATAGTTGTGGTACAGACCAGGATTCTAGCCAGGATGCCAGTCCATCAGAAATCTCTTGCACACATTGTGGCACAAGCTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAACAGAGGTGTTTTGAGAGACCTTTCCAAGAGACATCAGGAGTTATCTACTGTACCAGTTGAGCAGGTTGATCAAGGTAACAGCTCAGACTGTGGAACTGCAACTATCCCTGCACACAACATCACCCCTATTGAGCAACCATCTACTATTTGCTAG 861 0.4646 MEPPMYDHSQPLNTTVPITAGESDDGSGPDAGVDAQHQIQYETHGMDDSNSDAVYGNGSENPEFALQSFDESDQLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPNVGVNAVPQQSLRVESMDFPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALRMQRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGVLRDLSKRHQELSTVPVEQVDQGNSSDCGTATIPAHNITPIEQPSTIC* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2246 286 Pfam tify domain 71 102 IPR010399 -
Mtr5g2246 286 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Mtr5g2246 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 254 - -
Mtr5g2246 286 MobiDBLite consensus disorder prediction 177 216 - -
Mtr5g2246 286 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Mtr5g2246 286 MobiDBLite consensus disorder prediction 42 60 - -
Mtr5g2246 286 PANTHER GATA TRANSCRIPTION FACTOR 25 37 270 - -
Mtr5g2246 286 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Mtr5g2246 286 PANTHER GATA TRANSCRIPTION FACTOR 28 37 270 IPR045280 GO:0006355
Mtr5g2246 286 MobiDBLite consensus disorder prediction 1 60 - -
Mtr5g2246 286 Pfam CCT motif 135 176 IPR010402 GO:0005515
Mtr5g2246 286 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Mtr5g2246 286 MobiDBLite consensus disorder prediction 169 221 - -
Mtr5g2246 286 SMART tify_2 68 103 IPR010399 -
Mtr5g2246 286 Gene3D - 192 253 IPR013088 GO:0006355|GO:0008270
Mtr5g2246 286 CDD ZnF_GATA 202 246 IPR000679 GO:0006355|GO:0043565
Mtr5g2246 286 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Mtr5g2246 286 ProSiteProfiles GATA-type zinc finger domain profile. 197 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2246 Mtr-Chr5 29406620 29411519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2246 72 249 Tify Gene Family AT4G24470 62.778 2.36e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr5g2246 CCT 6.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2246 - - pvu:PHAVU_008G182900g 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2246 5 29406620 29411519 Mtr5g2246 5 29406620 29411519 ECH
Mtr5g2246 5 29406620 29411519 Mtr3g3554 3 49381985 49387612 PCT