Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2243 ATGAATGAACAACAAAACAAGATGTGTTTTTCAACTACAACCAACACGGGTTTTCTTCTTGACCCTGCAAAATGTGGTGTGCTGAATTTCCAAGACAAGCAAAGACTTGTTCACGAGGTTGCTCGTCAGTCCAAAGATGCCCCAAATATACTTCAAGCGTTTACTCGCCGGGAACTCCTAGAATTAATCTGTGCTGAATTAGGCAAAGAACGGAAGTACACAGGATACACGAAGGACCAGATGATAGAATATCTTCTGAAGTTAATTTCTAAGAAATCCAACTTGCACGTTGACCAAAATGCTTTTGCTTATTCTCCTTCCAAAAGTTGCATAGGATCTAAAAGGAAAAAGGAACCTCCATCTCCAGATTTACGTAATGTTCAACTAGAGAACACAAATGAGGAAACAATGAAAACCTTAGTGTGTCAGAATGTTGCATGCAAAGCTACGCTGAATCCAGAACGTTCGTTTTGCAAGAGATGTTCTTGTTGTATATGTCGTTGTTACGATGATAACAAGGATCCCAGTTTGTGGTTGACCTGCACCTCTGATAATCCAAATGAGGCATCATGTGGAATGTCATGCCATTTGCAATGTGCCTTAAGTAATCAAATGGCTTGCATTTTGAAGGGAGGTTGTAGTACAACCTTAGATGGAAGCTTCTATTGTGTTTCTTGTGGAAAAATTAACGACTTAATGAGGACTTGGAGAAAGCAATTATTGGTTGCCAAAGAAGCAAGAAGAGTGGATATACTCTCTTTGCGAATTTCCTTGGCCCACAGAATGCTCATAGGAACAAAAGTATACAAGGAAGTGCAAAAGATTGTAGAAACTGCTCTCAAATTACTGGAGAATGAAGTGGGACCTCTGGATCATGTATATGCTAGGATGACTCGTGGAATTGTGAGCAGGCTCTCGTGTGGTGCTGAGGTTCAGAAGTTGTGCTCTACTGCAGTTCAATGTTTTGATTTAAAGTTTTCTGAAATCTTTTCTAGTTGTGCAGAAAAGAAAGAAGCACCAACAGCATGCTCTTTACATTTTGAAGAGTGTCTTCCTACCTCAGTGGTCATTGTGCTTGAATACAACGACAAACTTTTAAAGAACTTTCTAGGCTGCAGGCTTTGGCACGGAATATCAACAATGGACTATCCGGAACAACCCACTTTCATTGTTTTGAGGCCTGAGAAAAGATTCAAGTTAGAAAACCTCACACCGTCTACTGAGTACTCTTGCAAGGCTTCTATATTCAGCAGCACAGGGATTTTAGGTGCAGCAGAAGCTAAATGGGTAACACCTTGCAAACAACCTCCAAAAGTTATTCGACATATTGCGAATCATTCAACTGTCAACACATGTGCACCAGACCAAATTAAGATACCTGCTGAAAAGCACATGCTTTTAAACATCCCGAACTGGATTGAAGAGTTTCTTAGCAAGCCTCCAACAGCAGAACCTTTTTCGCATAAAAGTTTTGCAGCAATTCCACCTGCCACACCTTCTAAATCCAACGAAATGAGACAAATGACTGGTTTAAATTCTAGAAAACGCGTGAAGGAAAATGATTATGAGTATTCTGTGAGGGTAGTCAAATGGTTAGAGCATCAAGGGCACATAGACGAAATCTTCAGAGTGAAGTTTCTCACTTGGTTCAGTCTCAAGGCTAATCAGCAAGAACGAAGGGTGGTTAGTGCTTTTGTTGATGCACTGATTGATGACCCTGCAAGCTTAGCAGACCAGCTAATACACACTTTCACTGATGAGATTTGTTGCGATCAAAAATCTTAG 1785 0.4045 MNEQQNKMCFSTTTNTGFLLDPAKCGVLNFQDKQRLVHEVARQSKDAPNILQAFTRRELLELICAELGKERKYTGYTKDQMIEYLLKLISKKSNLHVDQNAFAYSPSKSCIGSKRKKEPPSPDLRNVQLENTNEETMKTLVCQNVACKATLNPERSFCKRCSCCICRCYDDNKDPSLWLTCTSDNPNEASCGMSCHLQCALSNQMACILKGGCSTTLDGSFYCVSCGKINDLMRTWRKQLLVAKEARRVDILSLRISLAHRMLIGTKVYKEVQKIVETALKLLENEVGPLDHVYARMTRGIVSRLSCGAEVQKLCSTAVQCFDLKFSEIFSSCAEKKEAPTACSLHFEECLPTSVVIVLEYNDKLLKNFLGCRLWHGISTMDYPEQPTFIVLRPEKRFKLENLTPSTEYSCKASIFSSTGILGAAEAKWVTPCKQPPKVIRHIANHSTVNTCAPDQIKIPAEKHMLLNIPNWIEEFLSKPPTAEPFSHKSFAAIPPATPSKSNEMRQMTGLNSRKRVKENDYEYSVRVVKWLEHQGHIDEIFRVKFLTWFSLKANQQERRVVSAFVDALIDDPASLADQLIHTFTDEICCDQKS* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2243 594 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
Mtr5g2243 594 PANTHER OS08G0220600 PROTEIN 11 594 - -
Mtr5g2243 594 PANTHER VIN3-LIKE PROTEIN 2-RELATED 11 594 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2243 Mtr-Chr5 29369083 29374346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2243 17 431 PHD Gene Family AT4G30200 38.210 5.26e-81 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2243 - - gmx:100785502 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2243 5 29369083 29374346 Mtr5g2243 5 29369083 29374346 ECH