Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2236 ATGGGTGGTGCACCTTCTTTCAATCCATGCAGCGTCACATTTTTTTCCTTCCACCCCATCATCGTCGTCACCGTCACCACCACGCTCATTCTAATCGCAAGTGCCGAAGATCACAATCCAAAAGAAAATGGAGCAATTCCAAGTCTCGAAGATGACAATGGTGCCACCACGTCATCCCCACCACCACCGGTATCATCAAGTGAGAGCTCCAATGATAGGGAGAGGAGCTCTGATGCCTTCAAACCTAGCACTGCAGTGATAGTAGGTGTTTTAACAACCACATTTTTCCTTGTGTTGCTACTCCTTCTCTACGCCAGACACTGCAACCGTGCAGATATGCCCGTTGCTAGCAACCCGAATCCCAATGGAGAATCAAATTTGCATAAGAGGAAAAACTCTGGAATCGAACGCGCGGTTGTGGAATCATTGCCGGTTTTTAAGTTTGGGTCATTGAGTGGCAAAAAAAATGGACTTGAATGTGCAGTTTGTCTCAATGGGTTTGAGGATCCCGATGTACTTAGGTTATTGCCAAAATGCAAACATGCTTTCCACATGGAATGTGTTGACATGTGGCTTGATGAACATTCCTCGTGCCCACTGTGTCGCTATAAGGTGAACCCTGATGATATTGTTCTTCCTCAACGACAAAATACTGAGGAAGAATTGTTGTCATCAAACATTGAACGAGGTAATAATGTTAACGACAATGGGCCACAACATGAAAATGAAAATGTAGGTCCACAACAAGTGTCTTCAATGGAAAAGCGAGATAGTGGTTTGTCACAAATTAATGCTTTGGAGAATAATGAAGTGTCGTCATCTAGGAGATCTTTCGATAGTAATAATTCTAGAAATGCAAGGAGTGAGGGTGTCATTGGAGAACATAGGTTAGATCACCAAATAATTTTGTCCCCTACTTATAATTCACATAGTAGGGTCCACCAACGATCGATCAATTCTAAATCGTGTGATATGCTTTACTTAACATTTGATGGGATCATTAGTGAGGGTTCCTCTTCACAGTTGAACATCACACATAGGGGAAGGAGAACAATGGTGGAGCGTAATCGCGATGTTCTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGGAGGGGTGAAAGGAATTTGAGGACCGTCTCGGATATGGCAGGAATGAGTAAGTTTTTGAGTAGGGAGATAGGAAGGGAAAGAGAACGTGGTGGTGGTCGAGAAGAACAAGAGAGACAACGTGAGGGAGTTGCTTCAAGGTGGTTGGCCTGGATTTCTGGGTCAAAATCAAAAGGAGCAACTTCTGAATGA 1302 0.437 MGGAPSFNPCSVTFFSFHPIIVVTVTTTLILIASAEDHNPKENGAIPSLEDDNGATTSSPPPPVSSSESSNDRERSSDAFKPSTAVIVGVLTTTFFLVLLLLLYARHCNRADMPVASNPNPNGESNLHKRKNSGIERAVVESLPVFKFGSLSGKKNGLECAVCLNGFEDPDVLRLLPKCKHAFHMECVDMWLDEHSSCPLCRYKVNPDDIVLPQRQNTEEELLSSNIERGNNVNDNGPQHENENVGPQQVSSMEKRDSGLSQINALENNEVSSSRRSFDSNNSRNARSEGVIGEHRLDHQIILSPTYNSHSRVHQRSINSKSCDMLYLTFDGIISEGSSSQLNITHRGRRTMVERNRDVLDDEMENGFGGGRGERNLRTVSDMAGMSKFLSREIGRERERGGGREEQERQREGVASRWLAWISGSKSKGATSE* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2236 433 MobiDBLite consensus disorder prediction 394 415 - -
Mtr5g2236 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 427 - -
Mtr5g2236 433 MobiDBLite consensus disorder prediction 40 78 - -
Mtr5g2236 433 Pfam Ring finger domain 159 202 IPR001841 -
Mtr5g2236 433 SMART ring_2 160 201 IPR001841 -
Mtr5g2236 433 MobiDBLite consensus disorder prediction 394 413 - -
Mtr5g2236 433 MobiDBLite consensus disorder prediction 50 70 - -
Mtr5g2236 433 PANTHER RING-H2 FINGER PROTEIN ATL43 50 427 - -
Mtr5g2236 433 CDD RING-H2_EL5_like 159 202 - -
Mtr5g2236 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 209 IPR013083 -
Mtr5g2236 433 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Mtr5g2236 433 SUPERFAMILY RING/U-box 141 208 - -
Mtr5g2236 433 MobiDBLite consensus disorder prediction 228 291 - -
Mtr5g2236 433 MobiDBLite consensus disorder prediction 228 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2236 Mtr-Chr5 29283197 29284498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2236 48 421 C3H Transcription Factor Family AT5G05810 37.857 2.14e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2236 K19041 - mtr:MTR_5g066250 780.015