LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g2234	ATGGCGAGGCAGAAGATAAAGATAAAGAAAATAGACAATGCAACAGCAAGACAAGTAACGTTTTCGAAGAGAAGAAGAGGGATCTTCAAGAAAGCTGAGGAGCTTTCGATTTTGTGTGATGCTGAGGTTGGTCTTGTTATTTTCTCAACAACTGGGAAACTATATGAATATGCCAGTTCCAATATGAAGGACATAATTACAAGGTATGGTCAGCAGTCCCACCACATCACCAAATTGGATAAACCTCTGCAAGTGCAGGTAGAAAAAAACATGCCAGCTGAATTGAATAAGGAAGTTGCTGATAGAACCCAACAACTAAGGGGGATGAAGAGTGAGGATTTTGAAGGGTTAAACTTAGAGGGGTTGCAGCAATTGGAGAAAAGTCTTGAATCAGGACTCAAGCGTGTGATTGAGATGAAGGAAAAGAAGATTCTTAATGAAATCAAGGCACTTCGAATGAAGGAAATCATGTTGGAAGAGGAGAACAAGCATTTAAAGCAAAAGTGGTTAGCTTTCTCACAGATGGCTATGTTAAGTATGGGAAAAAGTCCAATCTTTGGGGACTCAGATATTACCATGCAAGAAAATGTCTCAGCAGAGTCCATGAATAATGTCAGCAGCTGTAATAGTGGCCCTTCTCTTGAAGATGATTCCTCTGACACATCTCTTAAGTTAGGGTTACCATTTCCTAATTGA	696	0.398	MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSILCDAEVGLVIFSTTGKLYEYASSNMKDIITRYGQQSHHITKLDKPLQVQVEKNMPAELNKEVADRTQQLRGMKSEDFEGLNLEGLQQLEKSLESGLKRVIEMKEKKILNEIKALRMKEIMLEEENKHLKQKWLAFSQMAMLSMGKSPIFGDSDITMQENVSAESMNNVSSCNSGPSLEDDSSDTSLKLGLPFPN*	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g2234	231	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	MobiDBLite	consensus disorder prediction	199	231	-	-
	Mtr5g2234	231	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Mtr5g2234	231	ProSiteProfiles	K-box domain profile.	85	181	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mtr5g2234	231	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	225	-	-
	Mtr5g2234	231	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	CDD	MADS_MEF2_like	2	74	IPR033896	GO:0000977\|GO:0045944
	Mtr5g2234	231	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	Coils	Coil	122	142	-	-
	Mtr5g2234	231	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mtr5g2234	231	MobiDBLite	consensus disorder prediction	199	220	-	-
	Mtr5g2234	231	Pfam	K-box region	90	168	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mtr5g2234	231	Coils	Coil	148	168	-	-
	Mtr5g2234	231	PANTHER	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	1	225	-	-
	Mtr5g2234	231	SUPERFAMILY	SRF-like	3	75	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g2234	Mtr-Chr5	29241684	29261421	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g2234	1	229	MADS-box Gene Family	AT2G22540	49.372	9.03e-74	222

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mtr5g2234		K-box	1.5e-13	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g2234	-		-	gmx:100776749	266.159

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g2234	5	29241684	29261421	Mtr5g2234	5	29241684	29261421	ECH