Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2231 ATGCTTCCTCCTTTAAGAAGATTCTACGGGTTTGAGAGTTGGATGGATAATAAAGAGTTAGAGGAAATCAACTGTGACAAATCAAAATCGGAGAGAAAATCAAAAGAAGCATGCAAGAGTCATAGAGAAGCTGAAAGGAGACGCAGACAAAGAATCAACGCTCATCTCAACACTCTTCGCTCTCTCCTCCCTAACACCACTAAGTCCGATAAGGCGTCGTTGCTGGCGGAAGTGGTGCAGCACGTGAAACGGTTGAAGAAGGAAGCTGATGAAATGGCGAATCGTCACAATGATGGAGAGTCTTCTTCTTCGTGCAGCGGAGAACCTGGTTCAGTTAATTCTACAGAGGTAGTTGAGACATGGCCGTTTCCAGGAGAATCAGATGAGGCGACAGTGAGTTATTGCGGCAAAGAGGAAGGAGAACCACGGAGGATGAAAGTGACAGTGTGTTGTGAGGAGCGTCCGGGTCTGAACCATGATCTAACACAAGCAATCCGGTCTGTTTTAGCGAAACCGGTTCGAGCTGAGATGATGACGGTTGGAGGTAGGACAAAGACTGTTGTGGTGGTGGAGTGGCCTAATGGTGAAGGTGGTGATGATGTAAGAGAGGAGAAGGTGGTTGAAGCTTTGGAAAGGGGTTTGAAAGCTGTTATAGAGAATCGGGCTTTTGTGGATTCTGGGATGGGCCCGATTTTGTTGGGCCGAAAACGGGCTCGTGAGGTTGAATGTTCCTTGTTGTTGAGGAATGAGGACTTTTGCTAA 762 0.4724 MLPPLRRFYGFESWMDNKELEEINCDKSKSERKSKEACKSHREAERRRRQRINAHLNTLRSLLPNTTKSDKASLLAEVVQHVKRLKKEADEMANRHNDGESSSSCSGEPGSVNSTEVVETWPFPGESDEATVSYCGKEEGEPRRMKVTVCCEERPGLNHDLTQAIRSVLAKPVRAEMMTVGGRTKTVVVVEWPNGEGGDDVREEKVVEALERGLKAVIENRAFVDSGMGPILLGRKRAREVECSLLLRNEDFC* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2231 253 MobiDBLite consensus disorder prediction 98 115 - -
Mtr5g2231 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 96 IPR036638 GO:0046983
Mtr5g2231 253 MobiDBLite consensus disorder prediction 26 49 - -
Mtr5g2231 253 PANTHER OS09G0463900 PROTEIN 17 240 - -
Mtr5g2231 253 Coils Coil 75 102 - -
Mtr5g2231 253 SMART finulus 42 91 IPR011598 GO:0046983
Mtr5g2231 253 Gene3D - 29 97 IPR036638 GO:0046983
Mtr5g2231 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Mtr5g2231 253 Pfam Helix-loop-helix DNA-binding domain 38 85 IPR011598 GO:0046983
Mtr5g2231 253 Gene3D - 141 221 - -
Mtr5g2231 253 CDD ACT_UUR-ACR-like 147 211 - -
Mtr5g2231 253 PANTHER TRANSCRIPTION FACTOR BHLH30 17 240 IPR045847 GO:0003700|GO:0006355
Mtr5g2231 253 MobiDBLite consensus disorder prediction 92 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2231 Mtr-Chr5 29188088 29189413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2231 33 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 38.537 1.65e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g2231 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2231 - - gmx:100816394 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2231 5 29188088 29189413 Mtr5g2231 5 29188088 29189413 ECH