Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2227 ATGTTCTCAAACTTTCAACAACAACAACATCATAACCTATTTCAACCTTCACGTGAATGCCAAACCTCAGAAGAAGATGAAACCCGAAGCAGCGGTGGGCCCAGCCCAAACAAACCTTCCTGTAACGACGGCGCCACCATTGAAATTGGTCGTAGGCCAAGAGGCCGTCCACCTGGCTCCAAAAACAAGCCTAAAGCCCAATCACAAATCATAATCAATCACTCCTCCGACCCTGCCATGAGCCCACACATTCTCGAAATCCCAGAAGGCAGCGACGTCGTTGAAGCAATATCCCGGTTCAGTAACAGAAGAAAAACCGGTTTATGTGTATTAACCGGTTCAGGCACTGTAGCTAACGTTACACTCCGTCAACCTTCTGGTCCTCCTGGCACCACCGTTACTTTTCACGGTCGTTTCAACATTCTTTCAATCTCCGCCACGTTCTTCTCTCCGTTAGAATCCTCACCACCCATGAACAAAGAATTCTCAATCTCACTCGCCGCACCTCAGGGTCAGATCGTTGGAGGGTTTGTCGTCGGTCCGTTGCTTGCCGCCGGTACGGTGTTTGTCATTGCTGCTTCCTTTAACAATCCTTCTTATCATAGATTACCTTTGGAAGAGGATGTGAGGAATAACTCAGTCTCCGGCGGCTATGAAGAGAAGTCGCCGCCGCAGCTTTCTGGTGGAGAGTCGTGTATGTATAGCTCTCAGCTTCCTTCTGATGTGATTTGGGCTCCAACGGCAAGAACAAATTTCTGA 759 0.4875 MFSNFQQQQHHNLFQPSRECQTSEEDETRSSGGPSPNKPSCNDGATIEIGRRPRGRPPGSKNKPKAQSQIIINHSSDPAMSPHILEIPEGSDVVEAISRFSNRRKTGLCVLTGSGTVANVTLRQPSGPPGTTVTFHGRFNILSISATFFSPLESSPPMNKEFSISLAAPQGQIVGGFVVGPLLAAGTVFVIAASFNNPSYHRLPLEEDVRNNSVSGGYEEKSPPQLSGGESCMYSSQLPSDVIWAPTARTNF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2227 252 MobiDBLite consensus disorder prediction 1 67 - -
Mtr5g2227 252 MobiDBLite consensus disorder prediction 1 19 - -
Mtr5g2227 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 249 IPR014476 GO:0003680
Mtr5g2227 252 Gene3D - 81 215 - -
Mtr5g2227 252 ProSiteProfiles PPC domain profile profile. 77 216 IPR005175 -
Mtr5g2227 252 MobiDBLite consensus disorder prediction 212 232 - -
Mtr5g2227 252 CDD DUF296 82 195 IPR005175 -
Mtr5g2227 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 207 - -
Mtr5g2227 252 MobiDBLite consensus disorder prediction 27 42 - -
Mtr5g2227 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 6 249 - -
Mtr5g2227 252 PIRSF ESCAROLA 1 244 IPR014476 GO:0003680
Mtr5g2227 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 197 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2227 Mtr-Chr5 29159596 29160867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2227 43 249 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.850 1.66e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2227 - - cam:101500910 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2227 5 29159596 29160867 Mtr5g2227 5 29159596 29160867 ECH