Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2219 ATGAACAACAACATCAATTTCGACAACCACAACACTTCCCAGAAACCCGATCAAATTCCCGACCCAAATTCCTATCTCAACTTCGATTTCCTCTCAACTCTCTCTAAACCCAAGGATTATTACAAGATATTAGAAGTGGATTACGATGCAAATGATGATACTATTCGCTCTAATTACATTCGTCTTGCTTTGAAATGGCACCCGGATAAACAGAAAGACCAGGATTCCGCCACGTCACGGTTTCAAGATATAAATGAGGCCTACCAGGTTTTGAGTGATCCAGACAAAAGGAGAGAGTATGACATAAACGGGATGCGTTACGTATATGATTACAATATCATTGATTATCTTAACCGTTACAAGGGTCTCATATTGACTTGCAATGGCCTTGGCATAAAGCATTCAATATGGTAA 414 0.3937 MNNNINFDNHNTSQKPDQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDSATSRFQDINEAYQVLSDPDKRREYDINGMRYVYDYNIIDYLNRYKGLILTCNGLGIKHSIW* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2219 137 SUPERFAMILY Chaperone J-domain 34 123 IPR036869 -
Mtr5g2219 137 Pfam DnaJ domain 39 101 IPR001623 -
Mtr5g2219 137 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Mtr5g2219 137 SMART dnaj_3 38 96 IPR001623 -
Mtr5g2219 137 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g2219 137 ProSiteProfiles dnaJ domain profile. 39 104 IPR001623 -
Mtr5g2219 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 10 137 - -
Mtr5g2219 137 CDD DnaJ 39 93 IPR001623 -
Mtr5g2219 137 PRINTS DnaJ domain signature 41 59 IPR001623 -
Mtr5g2219 137 PRINTS DnaJ domain signature 59 74 IPR001623 -
Mtr5g2219 137 PRINTS DnaJ domain signature 76 96 IPR001623 -
Mtr5g2219 137 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 10 137 - -
Mtr5g2219 137 Gene3D DnaJ domain 30 115 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2219 Mtr-Chr5 29060720 29064585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2219 32 101 C2H2 Transcription Factor Family AT1G74250 41.333 1.14e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2219 - - var:108338470 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2219 5 29060720 29064585 Mtr5g2219 5 29060720 29064585 ECH