Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2218 ATGGCACCACCAAGTTTTGATTTTTCATGTCTTCTATGCACTGAAGACAGTAGCATTTTAGATGAGAATGATCTTGGTGGTTCAATGGAAGATGAAACTGAGCAATTTGATGAGCCAATTGAGTATGTGCCACCACCATTGTTGCCACCTCCATTGCTGAGTGAGGAGAATTTGAAGGTTTTGATTGAAAAAGAATGTCATCACTTGCCTGCTAGTGATTATGTCAATAGGCTGAAAAATGGAGAATTGGATTTGCAGGGCAGGATGGAATCCATTGATTGGATGGAAAAGGCTGGACTGTACTTTGGTTTTGGACCTCTCTGTATTTATCTAGCTATACGCTACATGGATCGCTTCCTTTCTGTAGTTGACATGCTGAAGGAAAGAAAGTGGTCAATTCAACTCTTGGCTTTTTGTTGCTTATATCTGGCAGCCAAAATTGATGAGGTTGTTGTTCCTCGATCTGTTGATATGCAGATGGATGAAAAGAAGTATTTATTTGATAAGAAAACATTACGTACGACAGAGCTTCTGATACTAAGCACATTGAACTGGAGAATGCAAGCAATTACACCTTTCTCCTACATTGACTTTTTCCTTAACAAGGTCAATGGTGATCAAGTTCCAATAGGAGATTCAATTTTGCAATCTTTCCGACTCATAATGAGTACTGTAAGAGGACTTGACTTCATTCAGTTCAGACCATCTGAAATTGCAGCAGCTGTTGCAGTGCTAGTATCTGTGGAGGGTGAAAACCTAATTGTTCAAACTGAGAAAGCACTTTCTCTTCTCATTGAATATGTAGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTGTTATCAGGTAGTGGTTCTTCTGCAAAGGATGCTAATGTTTCTGTCCCTTTTGTAGCTCAAACTCCAATAGGAGTGTTGGATGCTTTATGCCTCAGCTACAATAGTGATGACAATCACTCAGATGCTACTACTGCACCTCTTGCAGATTCTCCACTTCATAACAGCCCTGATGCTAAACGCAAGAAAACCATATCCAACTTTGAAGAGCAGCCATTACCTGAAAGCTATAAACCTCCTGCAGATGAACCTTGGATGACTGGCTTGACTGGACTGTTCTGTCCTTGTGTACTATTTGGACGCAATTTACAAAGCTTGAGGGAAGACACTCATTGGACTAGGCCATGCATTTGTCATGCCATTTTTGTCGAAGGTGGCATTTCTTTGGGTATAGCAAATGTAGCTGCAGCTTTCTTAATTCCTGCCATTAATCCATGGATATCATGTGCCATTTGTGAGGGTTTATATTTCATTTGGATTTTGAGAGATTTCAATTTGAAGACTTTTAAGATTTCAATGTACTATATGGATTTATAA 1383 0.3926 MAPPSFDFSCLLCTEDSSILDENDLGGSMEDETEQFDEPIEYVPPPLLPPPLLSEENLKVLIEKECHHLPASDYVNRLKNGELDLQGRMESIDWMEKAGLYFGFGPLCIYLAIRYMDRFLSVVDMLKERKWSIQLLAFCCLYLAAKIDEVVVPRSVDMQMDEKKYLFDKKTLRTTELLILSTLNWRMQAITPFSYIDFFLNKVNGDQVPIGDSILQSFRLIMSTVRGLDFIQFRPSEIAAAVAVLVSVEGENLIVQTEKALSLLIEYVEKEKVMKCIEMIQQLLSGSGSSAKDANVSVPFVAQTPIGVLDALCLSYNSDDNHSDATTAPLADSPLHNSPDAKRKKTISNFEEQPLPESYKPPADEPWMTGLTGLFCPCVLFGRNLQSLREDTHWTRPCICHAIFVEGGISLGIANVAAAFLIPAINPWISCAICEGLYFIWILRDFNLKTFKISMYYMDL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2218 460 Gene3D - 58 279 - -
Mtr5g2218 460 Pfam Cyclin, C-terminal domain 190 292 IPR004367 -
Mtr5g2218 460 SMART Cyclin_C_2 190 307 IPR004367 -
Mtr5g2218 460 Pfam Cyclin, N-terminal domain 58 187 IPR006671 -
Mtr5g2218 460 ProSitePatterns Cyclins signature. 88 119 IPR006671 -
Mtr5g2218 460 PANTHER CYCLINS 4 347 IPR039361 -
Mtr5g2218 460 SMART cyclin_7 93 181 IPR013763 -
Mtr5g2218 460 SUPERFAMILY Cyclin-like 50 187 IPR036915 -
Mtr5g2218 460 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 4 347 - -
Mtr5g2218 460 Gene3D - 71 188 - -
Mtr5g2218 460 CDD CYCLIN 87 180 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2218 Mtr-Chr5 29037433 29045878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2218 55 327 Core Cell Cycle Gene Families AT2G22490 42.086 1.09e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2218 K18810 - gmx:100803873 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2218 5 29037433 29045878 Mtr5g2218 5 29037433 29045878 ECH