Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2210 ATGGAATTTGATGAACAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAATACAAACACCAGTGCCAACGAGTTATGACTCACTTAGTAACTCAGCTTCACGTTCAAAACTCACCGTTGGAGTTGACGGAAGGAAAGGTAACGGCAACGGCGGTTTTGCTTCGGTGAGGTACCGAGAATGTCAGAAGAATCACGCCGTTAGCTTCGGTGGCCACGCTGTTGACGGTTGTTGCGAGTTTATTGCTGCCGGTGAAGAAGGAACACTTGAAGCTGTTATTTGCGCCGCTTGTAACTGTCACCGGAACTTCCACCGCAAAGAGATCGATGGTGAAACGGTTAGTTCATGTAACCGGCCACAGCCACCACCTCCACCGCCGCAATACCATCACCACAACAATCAATTCTCGCCTTACTACCACCGTGCTCCTCCTTCCACAGCCGGTTACCTTCACCACCATCATCTTGCAACTCCGGTGGCACATCACAGACCGTTGGCTCTCCCTGCTGCTGCTTCCGGTGGTGGAATGAGCAGAGAAGATGATGATATGTCAAACCCTAGCAGTAGCGGTGGAGGTGGTGGTGGTGGTGGTGGTAGCGGTGGTAGTGGATCAAGGAAGAGATTCAGAACAAAATTCACTCAGGAACAGAAAGAGAAATTGCTGGCTTTTGCAGAAGAACATGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTATCAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 807 0.4783 MEFDEQEEQEEEMEIPEIQTPVPTSYDSLSNSASRSKLTVGVDGRKGNGNGGFASVRYRECQKNHAVSFGGHAVDGCCEFIAAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCNRPQPPPPPPQYHHHNNQFSPYYHRAPPSTAGYLHHHHLATPVAHHRPLALPAAASGGGMSREDDDMSNPSSSGGGGGGGGGSGGSGSRKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCIKRNVLKVWMHNNKNTLGKKP* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2210 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Mtr5g2210 268 MobiDBLite consensus disorder prediction 112 143 - -
Mtr5g2210 268 MobiDBLite consensus disorder prediction 1 15 - -
Mtr5g2210 268 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Mtr5g2210 268 MobiDBLite consensus disorder prediction 1 43 - -
Mtr5g2210 268 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Mtr5g2210 268 MobiDBLite consensus disorder prediction 21 38 - -
Mtr5g2210 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 267 - -
Mtr5g2210 268 Gene3D - 192 265 - -
Mtr5g2210 268 SUPERFAMILY Homeodomain-like 192 266 IPR009057 -
Mtr5g2210 268 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 205 262 IPR006455 -
Mtr5g2210 268 MobiDBLite consensus disorder prediction 168 208 - -
Mtr5g2210 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2210 Mtr-Chr5 28851906 28853103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2210 7 264 ZF-HD Transcription Factor Family AT4G24660 48.450 2.05e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr5g2210 ZF-HD_dimer 6.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2210 - - gmx:100776421 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2210 5 28851906 28853103 Mtr5g2210 5 28851906 28853103 ECH