Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2206 ATGGCGTTTGCGAGGGAACAAGAAGACAACAACAACAACAACAACAACATCACATCCACGACGGCGATTAACAAGCCTCCTATCCTTCGTGTCTATTCAAGAAAGAGACGCAGAACAAACGTGGCGGTGGCGGATGAATTAGCAAAGAACGAAGAACAACAACAACAACAAACCAATGGTAAACGTAACCGGAAAACCGATGAAGCTGCTTCTTCTTCTTCCGTTGTTGTTGTTCGAAAGAGTCACCGTATAAGAAGAACAACAACTAAAGCTCCCGTCTTAACAGACAAGAAGAAGAATCTTGGTAGTGGTGGTGGTGATGATGGTGCTGAGAAAACCAACTCAATTTCTCGAAAGAAACCCGGAAAAGGAAAACAGACTCCTCACACTAAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAAAGAAATGACAGTGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTTTATCCTGTATAAAAAAATGGTATCCCCTCTTGAAAGAGGAACAAATTGCTGATGCCTGTCCTGTCTGCTGTGGTAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTTATCGATTCAATTAAAGGAAAGAAGGAGGAAACCAATGATCATCATCAGGCCGAGTTCTCCAAGTATATGCTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGAACAAATGGCCGAGAAGGAGATAGAAGCCAAGTTACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAAGCAAATCCCCATAATGATGAGCGCATGTACTGCGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGCACAGAATGTTCCTTTGACCTTTGTCTCCTCTGTTGCTGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGAACCATTTGATTTTGAGTTTGTCTTCCGAGGTCCAAATTATCTACATGGTGAAGTTGCAAAGAAAGTAACCAGATACAGAGCACTTGATGCTGGTGCCCAGCCTGAGATTCGTACATGGTCAAAATCTGGGTGGCATGCAGATAGTGATGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTTCGCCAGATTGTATCTCTAAGTTAGTATGTAAAGCAAAAGAACTTGCAGATTCAATGAAACTTCAAGATGCAGAGGTGACTCTTGATAATAGCTGCTTTTGTTTGAAGCCTGTTAGGAACAGAGATAATAAACACAATAACGCAAGGGAAGCAGGTCTTTGCAAAGAATCCAGGGGCAACTTTTTGTACTGTCCTAGGGCCGTAGACCTTCAACATGATGATTTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGTTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAGATAAACAAAAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTGTCCCAAGGATAAACATGATTGGCCTCAAGTATTGAAATTGAAAGATTGGCCTCCTTCTAAACTATTTGAAGAAAGTTTACCGCGTCATTGTGCGGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCAGTGACTAGGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAATCAAAACTGGATCGTGTGAGTAGTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCAATGTTGAAAATAGTTTGTTGGTCGGTGGGGGTCCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGATGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTTTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATTGGGCATAAGAAAAAGCTTAAGGAGGAGTACGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCTGGCTGCCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATACTATGATCGATGTGGTCAAAAAGTTGGAGAAAGCAAGTAGCCAATGA 2514 0.42 MAFAREQEDNNNNNNNITSTTAINKPPILRVYSRKRRRTNVAVADELAKNEEQQQQQTNGKRNRKTDEAASSSSVVVVRKSHRIRRTTTKAPVLTDKKKNLGSGGGDDGAEKTNSISRKKPGKGKQTPHTKWIEEESLMCHQCQRNDSGRVVRCTKCKRKRYCLSCIKKWYPLLKEEQIADACPVCCGNCNCKACLKSRKLIDSIKGKKEETNDHHQAEFSKYMLKALLPHLIRLDQEQMAEKEIEAKLQGLSLSELKIKKANPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCCELRCGQLLGGAEPFDFEFVFRGPNYLHGEVAKKVTRYRALDAGAQPEIRTWSKSGWHADSDGNIPCPKPEIKCDHGYLELKSVFSPDCISKLVCKAKELADSMKLQDAEVTLDNSCFCLKPVRNRDNKHNNAREAGLCKESRGNFLYCPRAVDLQHDDLGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNCPKDKHDWPQVLKLKDWPPSKLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAQELGRGDSVTRLHCDMSDAVNVLTHIAESKLDRVSSDAIKKLKQKHLEQDKRELHGDIQDGETNVENSLLVGGGPLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPLEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYTMIDVVKKLEKASSQ* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2206 837 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 835 IPR045109 GO:0032454|GO:0033169
Mtr5g2206 837 Gene3D Cupin 445 810 - -
Mtr5g2206 837 Pfam JmjC domain, hydroxylase 688 784 IPR003347 -
Mtr5g2206 837 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Mtr5g2206 837 MobiDBLite consensus disorder prediction 45 129 - -
Mtr5g2206 837 ProSiteProfiles JmjC domain profile. 578 801 IPR003347 -
Mtr5g2206 837 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g2206 837 SMART cupin_9 559 801 IPR003347 -
Mtr5g2206 837 SUPERFAMILY Clavaminate synthase-like 460 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2206 Mtr-Chr5 28738864 28746332 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr5g2206 JmjC 2.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2206 K15601 - vvi:100261347 828.935