Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2199 ATGCGCATTCACACCATATTCCCTGCACCCGCACCATCTCTCACTCTCTTACAACTCTGTAAAAAATTTCACCGCCATGCATGGCAACCGTTTCCTTTTCTTCTTCTTTTTCTTTCTTTCATCTTTCCGGCAACTGCTCAGCCATCACCACCGCAAGATGCATTCGCGAAAATGAAGTTCGACAAAACTATGGCATCAGTCCTTGTGATACTCGTCATGGTTTTCTTCACATTAGGTTTTATTTCAATCTACACTCGCCAATGTAGAGAACGAAGAATACGAGGAAGGGTCGATCTAACTGCTCCGGTTACCGGTGGTGATGTTTGCCGGCAATCACGCGGTCTTGATCCAACGATCATTGAAAATTTTCCGAAATTTGTATATTCTGAGGTGAAGGATCTCAAGATTGGAAGAGTCACGTTAGAATGTGCAGTGTGTTTAAATGAGTTTGCGGATGATGAAACGCTGCGTTTGATTCCTAATTGTAGCCATGTATTTCATCGTGATTGTGTTGATGTTTGGTTGTTGCATCACTCTACTTGTCCGGTTTGTCGAGCTGAACTTGTTCCCGGTTCGGATGATGCAGGTTCTTCTGTTCAGATACAGATCTCTGAACCAAATTTGGCTGAACCCGTTTTTAATCATGAGCCCGATGTTATTGAACCGGTTGGTTTGGATGAGAAGAAAAAAGTTTTAATAGTGAGTCCAAGTGTGAATTTTGATGGTATGAACCGGACTCCCGTTCGGTCCATGTCAGTGGGGTTTGGGTTTATGAGATTGTTTTCTCGGTCTAAATCAACGGGTCAATTAATGGTTCGGTCGGATGAGGATTGTGAGCGGTTCACGTTGAGATTGCCGGATGAAGTGCATAATCGATTAATGAATGATATCACGTTGCGCCGAACAAAGACCTGGGAAGCTACATTAGGTAGTGGGAAAAGGGGTTACCGAACAAGGAGTGTGGGGAGGAACTTTCTACAATATGAGCGGTTCAATGTGGAGAGCCGGCTGGACCAAAAAGGGTTCACGTGTGCCCCATCTTTTTTGGGCCGGGTTGGTTCGATGAGATCAACAAAGGATGGGAACAATGCAAGTGCAACAATGGGTGTTATGAGCAAAGTTGATGCTGGAGAACGTTCTTCGGATCGTTTAGTTTAA 1158 0.443 MRIHTIFPAPAPSLTLLQLCKKFHRHAWQPFPFLLLFLSFIFPATAQPSPPQDAFAKMKFDKTMASVLVILVMVFFTLGFISIYTRQCRERRIRGRVDLTAPVTGGDVCRQSRGLDPTIIENFPKFVYSEVKDLKIGRVTLECAVCLNEFADDETLRLIPNCSHVFHRDCVDVWLLHHSTCPVCRAELVPGSDDAGSSVQIQISEPNLAEPVFNHEPDVIEPVGLDEKKKVLIVSPSVNFDGMNRTPVRSMSVGFGFMRLFSRSKSTGQLMVRSDEDCERFTLRLPDEVHNRLMNDITLRRTKTWEATLGSGKRGYRTRSVGRNFLQYERFNVESRLDQKGFTCAPSFLGRVGSMRSTKDGNNASATMGVMSKVDAGERSSDRLV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2199 385 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Mtr5g2199 385 SUPERFAMILY RING/U-box 121 191 - -
Mtr5g2199 385 Pfam Ring finger domain 142 185 IPR001841 -
Mtr5g2199 385 PANTHER RING-H2 FINGER PROTEIN ATL11 38 313 - -
Mtr5g2199 385 PANTHER RING FINGER DOMAIN-CONTAINING 38 313 - -
Mtr5g2199 385 SMART ring_2 143 184 IPR001841 -
Mtr5g2199 385 MobiDBLite consensus disorder prediction 356 385 - -
Mtr5g2199 385 CDD RING-H2_PA-TM-RING 142 185 - -
Mtr5g2199 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2199 Mtr-Chr5 28663762 28665196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2199 30 362 Rapid Response to Elicitors AT3G05200 38.663 2.76e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2199 K10664 - gmx:100815982 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2199 5 28663762 28665196 Mtr5g2199 5 28663762 28665196 ECH
Mtr5g2199 5 28663762 28665196 Mtr3g3531 3 49139937 49141605 PCT