Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2198 ATGATCAATATGCAAAACAATAGTCCTTTTACACTCTTGAGTTTCAATCATATCCAAGCATGGCTCACTTTGGTTCTTGTTATTACTCTCATACAAATCTCACCACCGGTAATCGGTCAAGCAATAGGACCGGAAGATCCAACGGAGAACAACAGATCAGTAGCCACCATAATGGGAATTGTAGTCCTTATGTTCCTCTTCTCCGGTTTCCTTTCTCTCTACTCGGCAAAATGCACCGATCATCAACAAGGAGTTATTTTTGACCTGACTTTACCTAACGGAGCAAATGGTCTCCGGTCACAAAACAACGAGCCAAGTAACGGTCTTAACCAAGAAGTTATAGACACATTCCCAACTTTTCGTTACTCCAATGTCAAGGGACTCAAGATCGGGAAAAGCACATTGGCTTGTGCTGTTTGTTTGAATGAGTTTCAAGACGATGAAACATTGCGTTTAATTCCTAAATGTAACCATGTGTACCACCATGGTTGCATCGATATTTGGCTTGTCTCTCATGATACTTGCCCAGTTTGTCGTGCTAACCTTGCTCCAAGACCCGATATTGACACCACCGAGCCTACAATGATATCGAATCAGATACCAGAAGGAGAAGATAATCGTCAAGAATTGAGTATACAAATTTCAAATGATGAAGAAGTAGAACATATTGTTGAAGAGGAACAAAAGAAAGCCAACGTGGAAGTGGAAAATTCACCTAAGGTAGATGTACTTCGTAGGTCTAAAACATATTCTGCACCAACACGGTCAAGATCAACAGGATTCTTATCTATTCTCTTGTTATCACGGTCAAACTCAACAGGTGTGTTGGTGCAACCAGGTGAGGATTGTGAGAGGTTTACACTGAGGTTACCCGATAAAGTTCGAAAGCAGATGATGTTGAACACGACGACACTTAAGCGTGCAAAAAGTTGTGTAAGTTTTACGAGAATGAGCAGTGGCACGTTCGGATATAGGTCAAGAAGTTTTGGTTGTGGAAGTGGGATTGGTCAAGTGCAGTACGAAAGGTTTGGAAGTGAGGAAGAAGAGAATTACTTAGGGTTTCTTAGGAATAGTTGGAATAACAAATCGGTGAGAAAATCTCCTATGAAGTGTTTGGGAGTTGATATCGACAACGATGATGACGAACGATCCTCTGATCTTTTGTTTCCTGTGTAG 1176 0.4116 MINMQNNSPFTLLSFNHIQAWLTLVLVITLIQISPPVIGQAIGPEDPTENNRSVATIMGIVVLMFLFSGFLSLYSAKCTDHQQGVIFDLTLPNGANGLRSQNNEPSNGLNQEVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCNHVYHHGCIDIWLVSHDTCPVCRANLAPRPDIDTTEPTMISNQIPEGEDNRQELSIQISNDEEVEHIVEEEQKKANVEVENSPKVDVLRRSKTYSAPTRSRSTGFLSILLLSRSNSTGVLVQPGEDCERFTLRLPDKVRKQMMLNTTTLKRAKSCVSFTRMSSGTFGYRSRSFGCGSGIGQVQYERFGSEEEENYLGFLRNSWNNKSVRKSPMKCLGVDIDNDDDERSSDLLFPV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2198 391 PANTHER RING FINGER DOMAIN-CONTAINING 3 331 - -
Mtr5g2198 391 CDD RING-H2_EL5_like 137 179 - -
Mtr5g2198 391 SUPERFAMILY RING/U-box 131 186 - -
Mtr5g2198 391 SMART ring_2 137 178 IPR001841 -
Mtr5g2198 391 Pfam Ring finger domain 136 179 IPR001841 -
Mtr5g2198 391 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Mtr5g2198 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 185 IPR013083 -
Mtr5g2198 391 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2198 Mtr-Chr5 28655563 28657257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2198 53 328 Rapid Response to Elicitors AT3G05200 40.636 1.15e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2198 K10664 - gmx:100814384 349.362